Étude de l’évolution du coût des APC

Phase 1. Exploration des données - BSO

          

---

Objectif : Exploration de données et création d’une sous-base pour l’analyse

Source des données : Baromètre de la Science Ouverte

Date début de l’analyse : 27 janvier 2022

Date de la dernière modification : 11 février 2022

---

I - Données brutes

# Packages nécessaires à l'analyse
packages = c("tidyverse", "data.table", "plotly", "kableExtra", "knitr", "DT", "icons", "gganimate", "animation")

## Installation des packages si besoin et chargement des librairies
package.check <- lapply(
  packages,
  FUN = function(x) {
    if (!require(x, character.only = TRUE)) {
      install.packages(x, dependencies = TRUE)
      library(x, character.only = TRUE)
    }
  }
)


# Import des données
    #https://data.enseignementsup-recherche.gouv.fr/explore/dataset/open-access-monitor-france/export/?disjunctive.oa_host_type&disjunctive.year
start_time <- Sys.time()
bso_data <- fread("https://storage.gra.cloud.ovh.net/v1/AUTH_32c5d10cb0fe4519b957064a111717e3/bso_dump/bso-publications-20220118.csv.gz", na.strings=c("","NA"))
end_time <- Sys.time()

# Configuration du temps d'exécution de la commande
import_time <- end_time - start_time
import_time <- paste(round(as.numeric(import_time, units.difftime(import_time)),2), units.difftime(import_time))

Temps d’exécution de l’import des données : 35.39 secs.

Dimensions du jeu de données brut : 1340197 observations et 27 variables.

Les 100 premières observations :

kable(bso_data[c(1:100),], format = "html") %>% 
  kable_styling(bootstrap_options = c("striped", "hover"), 
                full_width = T, 
                font_size = 9, 
                fixed_thead = TRUE,  #fix headers when scrolling 
                html_font = "sans-serif") %>% 
  scroll_box(width = "100%", height = "600px")

doi	year	title	journal_issns	journal_issn_l	journal_name	publisher	publisher_dissemination	hal_id	pmid	bso_classification	bsso_classification	domains	lang	genre	amount_apc_EUR	detected_countries	bso_local_affiliations	is_oa	journal_is_in_doaj	journal_is_oa	observation_date	oa_host_type	oa_colors	licence_publisher	licence_repositories	repositories
10.1159/000343525	2013	Non-invasive evaluation of bladder outlet obstruction in men suspected of benign prostatic hyperplasia: usefulness of the d index.	1661-7649	1661-7649	Current Urology	Ovid Technologies (Wolters Kluwer Health)	Wolters Kluwer Health	NA	24917729	Medical research	Clinical Sciences	health	en	journal-article	0.0000	fr;us	NA	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;other	no license	other	PubMed Central
10.3390/jcm2040201	2013	Mesenchymal Stromal Cells: Updates and Therapeutic Outlook in Rheumatic Diseases.	2077-0383	2077-0383	Journal of Clinical Medicine	MDPI AG	MDPI	NA	26237144	Medical research	Clinical Sciences	health	en	journal-article	1588.4842	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	CiteSeerX;PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.5936/csbj.201303018	2013	The role of Lipoxin A4 in Cystic Fibrosis Lung Disease.	2001-0370	2001-0370	Computational and Structural Biotechnology Journal	Elsevier BV	Elsevier	NA	24688726	Biology (fond.)	Engineering;Other Medical and Health Sciences	health	en	journal-article	1790.1709	ie;fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central;pdfs.semanticscholar.org
10.1155/2013/317215	2013	A tool to investigate symmetry properties of newborns brain: the newborns’ symmetric brain atlas.	2314-4661	2314-4661	ISRN Neuroscience	Hindawi Limited	Hindawi	NA	24967308	Medical research	Psychology and Cognitive Sciences	health	en	journal-article	NA	fr	NA	TRUE	FALSE	TRUE	2021Q4	publisher;repository	green;other	cc-by	cc-by	PubMed Central;pdfs.semanticscholar.org
10.3897/bdj.1.e995	2013	Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal.	1314-2828,1314-2836	1314-2828	Biodiversity Data Journal	Pensoft Publishers	Pensoft Publishers	NA	24723782	Biology (fond.)	Other Biological Sciences	health	en	journal-article	397.7387	us;de;cz;ch;gb;bg;nl;fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central;Zenodo;bdj.pensoft.net;nhm.openrepository.com;pdfs.semanticscholar.org;repository.naturalis.nl
10.3390/life3020295	2013	Magnetotactic bacteria from extreme environments.	2075-1729	2075-1729	Life	MDPI AG	MDPI	NA	25369742	Biology (fond.)	Microbiology	health	en	journal-article	948.1522	us;fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	CiteSeerX;PubMed Central;digitalscholarship.unlv.edu;mdpi.com
10.3390/biology2031110	2013	The Role of Helicobacter pylori Outer Membrane Proteins in Adherence and Pathogenesis.	2079-7737	2079-7737	Biology	MDPI AG	MDPI	NA	24833057	Biology (fond.)	Microbiology	health	en	journal-article	1109.3825	pt;fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	CiteSeerX;PubMed Central;pdfs.semanticscholar.org;repositorio.insa.pt
10.3390/brainsci3041461	2013	White matter loss in a mouse model of periventricular leukomalacia is rescued by trophic factors.	2076-3425	2076-3425	Brain Sciences	MDPI AG	MDPI	NA	24961618	Medical research	Neurosciences	health	en	journal-article	1091.2094	mx;us;fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	California Digital Library - eScholarship;PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.1016/j.rinim.2013.05.004	2013	Perturbations of the CD8(+) T-cell repertoire in CVID patients with complications.	2211-2839	2211-2839	Results in Immunology	Elsevier BV	Elsevier	NA	24600567	Biology (fond.)	Microbiology	health	en	journal-article	2384.8283	fr	NA	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;hybrid	cc-by-nc-nd	no license	PubMed Central
10.1007/s00445-013-0762-x	2013	Dune bedforms produced by dilute pyroclastic density currents from the August 2006 eruption of Tungurahua volcano, Ecuador.	0258-8900,1432-0819	0258-8900	Bulletin of Volcanology	Springer Science and Business Media LLC	Springer	NA	26069385	Earth, Ecology, Energy and applied biology	Clinical Sciences;Public Health and Health Services	health	en	journal-article	1477.7676	de;ec;fr	NA	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;hybrid	cc-by	cc-by	PubMed Central;boris.unibe.ch
10.1021/nl303898y	2013	Modulating physical properties of isolated and self-assembled nanocrystals through change in nanocrystallinity.	1530-6984,1530-6992	1530-6984	Nano Letters	American Chemical Society (ACS)	American Chemical Society	NA	23272764	Physical sciences, Astronomy	Multidisciplinary	health	en	journal-article	NA	fr	NA	FALSE	FALSE	FALSE	2021Q4	closed	closed	NA	NA	NA
10.3390/metabo3010024	2013	Absolute Configuration of the New 3-epi-cladocroic Acid from the Mediterranean Sponge Haliclona fulva.	2218-1989	2218-1989	Metabolites	MDPI AG	MDPI	NA	24957888	Biology (fond.)	Biochemistry and Cell Biology;Chemical Sciences;Clinical Sciences	health	en	journal-article	1106.0228	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central;pdfs.semanticscholar.org
10.3390/biology2010317	2013	The dynamic arctic snow pack: an unexplored environment for microbial diversity and activity.	2079-7737	2079-7737	Biology	MDPI AG	MDPI	NA	24832663	Biology (fond.)	Microbiology	health	en	journal-article	1109.3825	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	CiteSeerX;PubMed Central;pdfs.semanticscholar.org
10.1140/epjc/s10052-013-2617-1	2013	Charmonium and e+e- pair photoproduction at mid-rapidity in ultra-peripheral Pb-Pb collisions at [Formula: see text].	1434-6044,1434-6052	1434-6044	The European Physical Journal C	Springer Science and Business Media LLC	Springer	NA	25814847	Physical sciences, Astronomy	Physical Sciences	health	en	journal-article	0.0000	us;br;hr;nl;mx;ro;gb;fr;th;no;se;am;ch;cu;pe;za;pl;hu;es;de;cn;pk;ua;dk;gr;it;fi;jp;cz;sk;in	775685019	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;other	cc-by	cc-by	PubMed Central;US Office of Scientific and Technical Information;arXiv;bora.uib.no;cds.cern.ch;iris.unito.it;ricerca.uniba.it;vinar.vin.bg.ac.rs;www.duo.uio.no
10.1140/epjc/s10052-013-2674-5	2013	Jet and underlying event properties as a function of charged-particle multiplicity in proton-proton collisions at [Formula: see text].	1434-6044,1434-6052	1434-6044	The European Physical Journal C	Springer Science and Business Media LLC	Springer	NA	25814851	Physical sciences, Astronomy	Physical Sciences	health	en	journal-article	0.0000	at;ru;tr;br;us;hr;co;mx;ee;fr;ge;th;gb;am;pt;ch;hu;pl;es;cn;de;pk;ua;by;gr;nz;it;cy;lt;fi;ie;cz;be;bg;eg;tw;rs;in	775685019	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;other	cc-by	cc-by	DIGITAL.CSIC (Spain);PubMed Central;US Office of Scientific and Technical Information;arXiv;archive.ugent.be;authors.library.caltech.edu;bib-pubdb1.desy.de;bura.brunel.ac.uk;cds.cern.ch;digibuo.uniovi.es;dipot.ulb.ac.be;dora;dspace.mit.edu;eresearch.ozyegin.edu.tr;iris.unibs.it;iris.unito.it;oaktrust.library.tamu.edu;repositorio.unesp.br;scholarship.rice.edu;vinar.vin.bg.ac.rs;www.zora.uzh.ch
10.1155/2013/746845	2013	Death Receptors in the Selective Degeneration of Motoneurons in Amyotrophic Lateral Sclerosis.	2090-858X,2090-8601	2090-8601	Journal of Neurodegenerative Diseases	Hindawi Limited	Hindawi	NA	26316997	Medical research	Clinical Sciences	health	en	journal-article	NA	ch;fr	NA	TRUE	FALSE	TRUE	2021Q4	publisher;repository	green;other	cc-by	cc-by	PubMed Central;pdfs.semanticscholar.org
10.1140/epjc/s10052-013-2306-0	2013	Jet energy resolution in proton-proton collisions at [Formula: see text] recorded in 2010 with the ATLAS detector.	1434-6044,1434-6052	1434-6044	The European Physical Journal C	Springer Science and Business Media LLC	Springer	NA	25814854	Physical sciences, Astronomy	Physical Sciences	health	en	journal-article	0.0000	at;us;tr;br;co;nl;ro;gb;se;ca;fr;no;ge;am;pt;ch;za;pl;si;es;de;cn;dk;cl;by;gr;it;au;ar;il;az;jp;cz;ma;sk;tw;rs	775685019	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;other	cc-by	cc-by	PubMed Central;US Office of Scientific and Technical Information;arXiv;authors.library.caltech.edu;bib-pubdb1.desy.de;cds.cern.ch;comum.rcaap.pt;dare.uva.nl;digital.library.adelaide.edu.au;dnet;dspace.calstate.edu;dspace.mit.edu;eprints.gla.ac.uk;eprints.lancs.ac.uk;https;openaccess.dogus.edu.tr;pure.ed.ac.uk;repositorium.sdum.uminho.pt;repository.ubn.ru.nl;ri.conicet.gov.ar;ruj.uj.edu.pl;sedici.unlp.edu.ar;vinar.vin.bg.ac.rs;wrap.warwick.ac.uk
10.3402/jmahp.v1i0.21131	2013	Drug reformulations and repositioning in pharmaceutical industry and its impact on market access: reassessment of nomenclature.	2001-6689	2001-6689	Journal of Market Access & Health Policy	Informa UK Limited	Informa	NA	27226826	Medical research	Public Health and Health Services	health	en	journal-article	1999.4583	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by-nc	cc-by	PubMed Central
10.4161/rdis.27228	2013	Natural breaking of the maternal silence at the mouse and human imprinted Prader-Willi locus: A whisper with functional consequences.	2167-5511	2167-5511	Rare Diseases	Informa UK Limited	Informa	NA	25003016	Biology (fond.)	Other Medical and Health Sciences	health	en	journal-article	1999.4583	fr	NA	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;hybrid	no license	cc-by-nc	PubMed Central
10.3389/fchem.2013.00010	2013	Electrogenerated poly(pyrrole-lactosyl) and poly(pyrrole-3’-sialyllactosyl) interfaces: toward the impedimetric detection of lectins.	2296-2646	2296-2646	Frontiers in Chemistry	Frontiers Media SA	Frontiers	NA	24790939	Chemistry	Chemical Sciences	health	en	journal-article	1768.5848	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central
10.3390/antiox2020037	2013	Comparative Study of Antioxidant Power, Polyphenols, Flavonoids and Betacyanins of the Peel and Pulp of Three Tunisian Opuntia Forms.	2076-3921	2076-3921	Antioxidants	MDPI AG	MDPI	NA	26787622	Biology (fond.)	Engineering	health	en	journal-article	991.0297	tn;fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.1007/s13546-014-0872-2	2013	[Veno-venous extracorporeal support to treat acute respiratory distress syndrome: Rationale and clinical objectives].	1624-0693,1951-6959	1624-0693	Réanimation	Lavoisier	Lavoisier	NA	32288734	Medical research	Clinical Sciences	health	fr	journal-article	NA	ca;fr	NA	TRUE	FALSE	FALSE	2021Q4	repository	green	NA	other	PubMed Central
10.3390/plants2020230	2013	Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection.	2223-7747	2223-7747	Plants	MDPI AG	MDPI	hal-02379666	27137374	Biology (fond.)	Engineering	health	en	journal-article	1111.9713	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	HAL;PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.1140/epjc/s10052-013-2494-7	2013	Measurement of masses in the [Formula: see text] system by kinematic endpoints in pp collisions at [Formula: see text].	1434-6044,1434-6052	1434-6044	The European Physical Journal C	Springer Science and Business Media LLC	Springer	NA	25814866	Physical sciences, Astronomy	Physical Sciences	health	en	journal-article	0.0000	at;ru;tr;br;us;hr;co;mx;ee;fr;ge;th;gb;am;pt;ch;hu;pl;es;cn;de;pk;ua;by;gr;nz;it;cy;lt;fi;ie;cz;be;bg;eg;tw;rs;in	775685019	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;other	cc-by	cc-by	PubMed Central;US Office of Scientific and Technical Information;americanae.aecid.es;arXiv;archive.ugent.be;authors.library.caltech.edu;bib-pubdb1.desy.de;bura.brunel.ac.uk;cds.cern.ch;digibuo.uniovi.es;dipot.ulb.ac.be;dora;eresearch.ozyegin.edu.tr;iris.unibs.it;irua;oaktrust.library.tamu.edu;scholarship.rice.edu;vinar.vin.bg.ac.rs;www.zora.uzh.ch
10.1590/s1980-57642013dn70100004	2013	Neuropathology of frontotemporal lobar degeneration: a review.	1980-5764	1980-5764	Dementia & Neuropsychologia	FapUNIFESP (SciELO)	FapUNIFESP (SciELO)	NA	29213815	Medical research	Psychology and Cognitive Sciences	health	en	journal-article	0.0000	fr;br	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;diamond	cc-by	cc-by	PubMed Central;pdfs.semanticscholar.org;scielo
10.1155/2013/748241	2013	Caseous necrosis of mitral annulus: a rare cause of stroke.	2090-6404,2090-6412	2090-6404	Case Reports in Cardiology	Hindawi Limited	Hindawi	NA	24829807	Medical research	Cardiorespiratory Medicine and Haematology	health	en	journal-article	491.3819	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central;pdfs.semanticscholar.org
10.1155/2013/648791	2013	Investigating Recent Testing among MSM: Results from Community-Based HIV Rapid Testing Attendees in France.	2090-7893,2090-7958	2090-7958	Journal of Sexually Transmitted Diseases	Hindawi Limited	Hindawi	NA	26316962	Medical research	Public Health and Health Services	health	en	journal-article	NA	fr	NA	TRUE	FALSE	TRUE	2021Q4	publisher;repository	green;other	cc-by	cc-by	PubMed Central;pdfs.semanticscholar.org
10.11646/zootaxa.3745.2.4	2013	Description of Culicoides paradoxalis sp. nov. from France and Portugal (Diptera: Ceratopogonidae).	1175-5334,1175-5326	1175-5326	Zootaxa	Magnolia Press	Magnolia Press	NA	25113346	Biology (fond.)	Other Biological Sciences	health	en	journal-article	NA	cz;pt;fr;gb	NA	FALSE	FALSE	FALSE	2021Q4	closed	closed	NA	NA	NA
10.1093/conphys/cot007	2013	Elevated corticosterone levels decrease reproductive output of chick-rearing Adélie penguins but do not affect chick mass at fledging.	2051-1434	2051-1434	Conservation Physiology	Oxford University Press (OUP)	Oxford University Press	NA	27293591	Biology (fond.)	Agricultural and Veterinary Sciences	health	en	journal-article	1594.0591	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central;pdfs.semanticscholar.org
10.1186/2193-1801-2-651	2013	Prevalence of cardio-respiratory factors in the occurrence of the decrease in oxygen uptake during supra-maximal, constant-power exercise.	2193-1801	2193-1801	SpringerPlus	Springer Science and Business Media LLC	Springer	NA	25379364	Medical research	Other Medical and Health Sciences	health	en	journal-article	886.2092	fr;au	NA	TRUE	FALSE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central
10.1016/s1877-1203(13)70348-3	2013		1877-1203	1877-1203	Revue des Maladies Respiratoires Actualités	Elsevier BV	Elsevier	NA	32362957	Medical research	NA	health	fr	journal-article	NA	fr	NA	TRUE	FALSE	FALSE	2021Q4	repository	green	NA	other	PubMed Central
10.1111/j.1600-0587.2012.07773.x	2012	Building megaphylogenies for macroecology: taking up the challenge.	0906-7590	0906-7590	Ecography	Wiley	Wiley	NA	24790290	Biology (fond.)	Other Biological Sciences	health	en	journal-article	NA	fr	NA	TRUE	FALSE	FALSE	2021Q4	repository	green	NA	no license	PubMed Central
10.1159/000342915	2012	Relative impact of iodine supplementation and maternal smoking on cord blood thyroglobulin in pregnant women with normal thyroid function.	2235-0802,2235-0640	2235-0640	European Thyroid Journal	S. Karger AG	S. Karger AG	NA	24783029	Medical research	Clinical Sciences	health	en	journal-article	1853.7521	fr	NA	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;hybrid	no license	other	PubMed Central
10.1186/2050-5736-1-13	2013	The road to clinical use of high-intensity focused ultrasound for liver cancer: technical and clinical consensus.	2050-5736	2050-5736	Journal of Therapeutic Ultrasound	Springer Science and Business Media LLC	Springer	inserm-00851863	25512859	Medical research	Clinical Sciences	health	en	journal-article	1477.7676	il;us;cn;ch;fr;nl;gb;it	NA	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;hybrid	cc-by	cc-by	HAL;PubMed Central;unige.ch
10.1074/mcp.m112.020727	2013	Identification of the hypoxia-inducible factor 2α nuclear interactome in melanoma cells reveals master proteins involved in melanoma development.	1535-9476	1535-9476	Molecular & Cellular Proteomics	Elsevier BV	Elsevier	NA	23275444	Biology (fond.)	Biochemistry and Cell Biology	health	en	journal-article	1827.0809	fr	NA	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;hybrid	cc-by	no license	PubMed Central
10.3390/jpm3030177	2013	Effect model law: an approach for the implementation of personalized medicine.	2075-4426	2075-4426	Journal of Personalized Medicine	MDPI AG	MDPI	NA	25562651	Medical research	Clinical Sciences	health	en	journal-article	1200.5771	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central;pdfs.semanticscholar.org
10.3390/metabo3020484	2013	Metabolite Identification through Machine Learning- Tackling CASMI Challenge Using FingerID.	2218-1989	2218-1989	Metabolites	MDPI AG	MDPI	NA	24958002	Biology (fond.)	Chemical Sciences	health	en	journal-article	1106.0228	fi;ch;fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central;aaltodoc.aalto.fi;pdfs.semanticscholar.org
10.3402/jmahp.v1i0.20892	2013	New drug regulations in France: what are the impacts on market access? Part 2 - impacts on market access and impacts for the pharmaceutical industry.	2001-6689	2001-6689	Journal of Market Access & Health Policy	Informa UK Limited	Informa	NA	27226829	Medical research	Pharmacology and Pharmaceutical Sciences	health	en	journal-article	1999.4583	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by-nc	cc-by	PubMed Central
10.12942/lrr-2013-3	2013	The Spin-Foam Approach to Quantum Gravity.	2367-3613,1433-8351	2367-3613	Living Reviews in Relativity	Springer Science and Business Media LLC	Springer	NA	28179842	Physical sciences, Astronomy	Physical Sciences	health	en	journal-article	0.0000	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;diamond	cc-by	other	CiteSeerX;PubMed Central;arXiv
10.1186/2051-4190-23-1	2013	Andrologie becomes Basic and Clinical Andrology.	2051-4190	2051-4190	Basic and Clinical Andrology	Springer Science and Business Media LLC	Springer	NA	25780565	Medical research	Clinical Sciences	health	en	journal-article	1477.7676	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central
10.3390/metabo3030820	2013	Physiological and Molecular Timing of the Glucose to Acetate Transition in Escherichia coli.	2218-1989	2218-1989	Metabolites	MDPI AG	MDPI	hal-02146740	24958151	Biology (fond.)	Agricultural and Veterinary Sciences;Chemical Sciences	health	en	journal-article	1106.0228	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	HAL;PubMed Central;pdfs.semanticscholar.org
10.3390/microarrays2010001	2013	Testing a Microarray to Detect and Monitor Toxic Microalgae in Arcachon Bay in France.	2076-3905	2076-3905	Microarrays	MDPI AG	MDPI	NA	27605178	Biology (fond.)	NA	health	en	journal-article	1040.6789	gb;fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	Archimer;PubMed Central;pdfs.semanticscholar.org
10.1186/2050-5736-1-24	2014	Trans-cranial focused ultrasound without hair shaving: feasibility study in an ex vivo cadaver model.	2050-5736	2050-5736	Journal of Therapeutic Ultrasound	Springer Science and Business Media LLC	Springer	inserm-00923402	25512865	Medical research	Clinical Sciences	health	en	journal-article	1728.4550	us;fr	NA	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;hybrid	cc-by	cc-by	HAL;PubMed Central
10.1159/000346174	2012	2012 European thyroid association guidelines for genetic testing and its clinical consequences in medullary thyroid cancer.	2235-0802,2235-0640	2235-0640	European Thyroid Journal	S. Karger AG	S. Karger AG	NA	24783025	Medical research	Clinical Sciences	health	en	journal-article	1853.7521	pt;de;gb;gr;fr;it	NA	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;hybrid	no license	no license	PubMed Central
10.4137/geg.s12144	2013	Epigenetics of autoantigens: new opportunities for therapy of autoimmune diseases.	1179-237X,1179-237X	1179-237X	Genetics & Epigenetics	SAGE Publications	SAGE Publications	NA	25512708	Medical research	Clinical Sciences	health	en	journal-article	1133.9583	us;fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by-nc	other	PubMed Central
10.1155/2013/323614	2013	Variant of X-Linked Chronic Granulomatous Disease Revealed by a Severe Burkholderia cepacia Invasive Infection in an Infant.	2090-6609,2090-6617	2090-6617	Case Reports in Immunology	Hindawi Limited	Hindawi	NA	25374740	Medical research	Other Medical and Health Sciences	health	en	journal-article	491.3819	fr;br	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central;pdfs.semanticscholar.org
10.1186/2051-4190-23-8	2013	The immunobiology of the mammalian epididymis: the black box is now open!	2051-4190	2051-4190	Basic and Clinical Andrology	Springer Science and Business Media LLC	Springer	NA	25780570	Biology (fond.)	Clinical Sciences	health	en	journal-article	1477.7676	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central
10.1016/j.exmath.2013.01.004	2013	Formal Laurent series in several variables.	0723-0869	0723-0869	Expositiones Mathematicae	Elsevier BV	Elsevier	NA	26478652	Mathematics	Physical Sciences	health	en	journal-article	2676.2600	at;fr	NA	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;hybrid	cc-by-nc-nd	other	CiteSeerX;PubMed Central
10.3390/plants2010107	2013	Cell Wall Composition, Biosynthesis and Remodeling during Pollen Tube Growth.	2223-7747	2223-7747	Plants	MDPI AG	MDPI	hal-01805132	27137369	Biology (fond.)	Biochemistry and Cell Biology	health	en	journal-article	1111.9713	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	HAL;PubMed Central;pdfs.semanticscholar.org
10.1140/epjc/s10052-013-2328-7	2013	Measurement of the [Formula: see text] production cross section in the tau + jets channel using the ATLAS detector.	1434-6044,1434-6052	1434-6044	The European Physical Journal C	Springer Science and Business Media LLC	Springer	NA	25814855	Physical sciences, Astronomy	Physical Sciences	health	en	journal-article	0.0000	at;us;tr;br;co;nl;ro;gb;se;ca;fr;no;ge;am;pt;ch;za;pl;si;es;de;cn;dk;cl;by;gr;it;au;ar;il;az;jp;cz;ma;sk;tw;rs	775685019	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;other	cc-by	cc-by	DiVA.org;PubMed Central;US Office of Scientific and Technical Information;arXiv;authors.library.caltech.edu;bib-pubdb1.desy.de;cds.cern.ch;dare.uva.nl;digital.library.adelaide.edu.au;dnet;dspace.calstate.edu;eprints.gla.ac.uk;eprints.lancs.ac.uk;https;openaccess.dogus.edu.tr;repositorium.sdum.uminho.pt;repository.ubn.ru.nl;ri.conicet.gov.ar;ruj.uj.edu.pl;sedici.unlp.edu.ar;vinar.vin.bg.ac.rs;wrap.warwick.ac.uk
10.3897/bdj.1.e1013	2013	Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data.	1314-2828,1314-2836	1314-2828	Biodiversity Data Journal	Pensoft Publishers	Pensoft Publishers	NA	24723752	Biology (fond.)	Other Biological Sciences	health	en	journal-article	397.7387	cn;hr;de;dk;gb;be;bg;gr;fr;it	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central;Pure (Denmark);Zenodo
10.1007/s00706-013-1030-7	2013	Electronic and solvent effects on kinetics of SNAr substitution reactions of substituted anilines with 2,6-bis(trifluoromethanesulfonyl)-4-nitroanisole in MeOH-Me2SO mixtures of varying composition: one reaction with two mechanistic pathways.	0026-9247,1434-4475	0026-9247	Monatshefte für Chemie - Chemical Monthly	Springer Science and Business Media LLC	Springer	NA	26166874	Chemistry	Chemical Sciences	health	en	journal-article	2368.5678	sa;tn;fr	NA	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;hybrid	cc-by	other	PubMed Central
10.1155/2013/434965	2013	The rendu-osler-weber disease revealed by a refractory hypoxemia and severe cerebral fat embolism.	2090-6420,2090-6439	2090-6420	Case Reports in Critical Care	Hindawi Limited	Hindawi	NA	24860682	Medical research	Clinical Sciences	health	en	journal-article	491.3819	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central;pdfs.semanticscholar.org
10.4137/jcd.s11034	2013	Crosstalk between apoptosis and autophagy: molecular mechanisms and therapeutic strategies in cancer.	1179-0660,1179-0660	1179-0660	Journal of Cell Death	SAGE Publications	SAGE Publications	NA	25278778	Medical research	Biochemistry and Cell Biology;Oncology and Carcinogenesis	health	en	journal-article	NA	us;fr	NA	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;other	cc-by-nc	other	PubMed Central;pdfs.semanticscholar.org
10.1140/epjc/s10052-013-2493-8	2013	Search for physics beyond the standard model in events with τ leptons, jets, and large transverse momentum imbalance in pp collisions at [Formula: see text].	1434-6044,1434-6052	1434-6044	The European Physical Journal C	Springer Science and Business Media LLC	Springer	NA	25814865	Physical sciences, Astronomy	Physical Sciences	health	en	journal-article	0.0000	at;ru;tr;br;us;hr;co;mx;ee;fr;ge;th;gb;am;pt;ch;hu;pl;es;cn;de;pk;ua;by;gr;nz;it;cy;lt;fi;cz;be;bg;eg;tw;rs;in	775685019	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;other	cc-by	cc-by	DIGITAL.CSIC (Spain);PubMed Central;americanae.aecid.es;arXiv;archive.ugent.be;authors.library.caltech.edu;bib-pubdb1.desy.de;bura.brunel.ac.uk;cds.cern.ch;dipot.ulb.ac.be;dora;dspace.mit.edu;eresearch.ozyegin.edu.tr;iris.unibs.it;irua;oaktrust.library.tamu.edu;scholarship.rice.edu;vinar.vin.bg.ac.rs;www.zora.uzh.ch
10.3390/diagnostics3010033	2013	A Review of Heating and Temperature Control in Microfluidic Systems: Techniques and Applications.	2075-4418	2075-4418	Diagnostics	MDPI AG	MDPI	hal-02172355	26835667	Medical research	Chemical Sciences;Engineering	health	en	journal-article	1103.3353	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	HAL;PubMed Central;mdpi.com
10.1007/s13546-014-0876-y	2013	[Particularities of ECMO in acute respiratory distress syndrome in pediatrics].	1624-0693,1951-6959	1624-0693	Réanimation	Lavoisier	Lavoisier	NA	32288736	Medical research	Paediatrics and Reproductive Medicine	health	fr	journal-article	NA	fr	NA	TRUE	FALSE	FALSE	2021Q4	repository	green	NA	other	PubMed Central
10.1186/2051-4190-23-3	2013	The nature of human sperm head vacuoles: a systematic literature review.	2051-4190	2051-4190	Basic and Clinical Andrology	Springer Science and Business Media LLC	Springer	NA	25780567	Medical research	Clinical Sciences	health	en	journal-article	1477.7676	fr	197819444	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central
10.3732/apps.1200179	2013	Annotation and re-sequencing of genes from de novo transcriptome assembly of Abies alba (Pinaceae).	2168-0450	2168-0450	Applications in Plant Sciences	Wiley	Wiley	hal-02643985	25202477	Biology (fond.)	Agricultural and Veterinary Sciences	health	en	journal-article	534.7182	de;fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by-nc-nd	other	HAL;PubMed Central;bioone.org
10.1590/s1980-57642013dn70100011	2013	Frontal presentation of Alzheimer’s disease: a series of patients with biological evidence by CSF biomarkers.	1980-5764	1980-5764	Dementia & Neuropsychologia	FapUNIFESP (SciELO)	FapUNIFESP (SciELO)	NA	29213822	Medical research	Neurosciences	health	en	journal-article	0.0000	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;diamond	cc-by	cc-by	PubMed Central;pdfs.semanticscholar.org
10.1155/2013/796174	2013	The effect of performing a dual task on postural control in children with autism.	2314-4661	2314-4661	ISRN Neuroscience	Hindawi Limited	Hindawi	NA	24959567	Medical research	Neurosciences	health	en	journal-article	NA	fr	NA	TRUE	FALSE	TRUE	2021Q4	publisher;repository	green;other	cc-by	cc-by	PubMed Central;pdfs.semanticscholar.org
10.1140/epjc/s10052-013-2362-5	2013	Multi-channel search for squarks and gluinos in [Formula: see text]pp collisions with the ATLAS detector at the LHC.	1434-6044,1434-6052	1434-6044	The European Physical Journal C	Springer Science and Business Media LLC	Springer	NA	25814856	Physical sciences, Astronomy	Physical Sciences	health	en	journal-article	0.0000	at;us;tr;br;co;nl;ro;gb;se;ca;fr;no;ge;am;pt;ch;za;pl;si;es;de;cn;dk;cl;by;gr;it;au;ar;il;az;jp;cz;ma;sk;tw;rs	775685019	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;other	cc-by	cc-by	DiVA.org;PubMed Central;US Office of Scientific and Technical Information;arXiv;authors.library.caltech.edu;bib-pubdb1.desy.de;cds.cern.ch;dare.uva.nl;digital.library.adelaide.edu.au;dspace.calstate.edu;dspace.mit.edu;eprints.gla.ac.uk;eprints.lancs.ac.uk;https;openaccess.dogus.edu.tr;pure.ed.ac.uk;repositorium.sdum.uminho.pt;repository.ubn.ru.nl;roderic.uv.es;ruj.uj.edu.pl;sedici.unlp.edu.ar;vinar.vin.bg.ac.rs;wrap.warwick.ac.uk
10.4161/rdis.24247	2013	A step closer toward therapies for p63-related disorders.	2167-5511	2167-5511	Rare Diseases	Informa UK Limited	Informa	NA	25002990	Medical research	Other Medical and Health Sciences	health	en	journal-article	1999.4583	fr;nl	NA	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;hybrid	no license	cc-by-nc	PubMed Central
10.1117/12.2006255	2013	Characterizing healthy and osteoarthritic knee cartilage on phase contrast CT with geometric texture features.	NA	NA	Medical Imaging 2013: Biomedical Applications in Molecular, Structural, and Functional Imaging	SPIE	SPIE Society of Photo-Optical Instrumentation Engineers	NA	29200588	Medical research	Engineering	health	en	proceedings	NA	de;us;fr	NA	TRUE	FALSE	FALSE	2021Q4	repository	green	NA	no license	PubMed Central
10.1140/epjc/s10052-013-2283-3	2013	Measurement of the sum of WW and WZ production with W+dijet events in pp collisions at [Formula: see text].	1434-6044,1434-6052	1434-6044	The European Physical Journal C	Springer Science and Business Media LLC	Springer	NA	25814853	Physical sciences, Astronomy	Physical Sciences	health	en	journal-article	0.0000	at;ru;tr;br;us;hr;co;mx;ee;fr;ge;th;gb;am;pt;ch;hu;pl;es;cn;de;pk;ua;by;gr;nz;it;cy;lt;fi;cz;be;bg;eg;tw;rs;in	775685019	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;other	cc-by	cc-by	DIGITAL.CSIC (Spain);PubMed Central;acervodigital.unesp.br;arXiv;archive.ugent.be;authors.library.caltech.edu;bura.brunel.ac.uk;cds.cern.ch;digibuo.uniovi.es;dipot.ulb.ac.be;dora;dspace.mit.edu;iris.unito.it;irua;scholarship.rice.edu;vinar.vin.bg.ac.rs
10.1007/s10967-013-2525-8	2013	Innovative concept for a major breakthrough in atmospheric radioactive xenon detection for nuclear explosion monitoring.	0236-5731,1588-2780	0236-5731	Journal of Radioanalytical and Nuclear Chemistry	Springer Science and Business Media LLC	Springer	NA	26224943	Chemistry	Physical Sciences	health	en	journal-article	1477.7676	be;fr	775685019	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;hybrid	cc-by	other	PubMed Central
10.3390/antibiotics2020288	2013	Multiple Pathways of Genome Plasticity Leading to Development of Antibiotic Resistance.	2079-6382	2079-6382	Antibiotics	MDPI AG	MDPI	pasteur-01691592	27029305	Medical research	Microbiology	health	en	journal-article	1158.3500	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	CiteSeerX;HAL;PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.3390/life3040524	2013	Distance and Size Perception in Astronauts during Long-Duration Spaceflight.	2075-1729	2075-1729	Life	MDPI AG	MDPI	NA	25369884	Biology (fond.)	Neurosciences;Psychology and Cognitive Sciences	health	en	journal-article	948.1522	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central;pdfs.semanticscholar.org
10.1186/2049-9256-1-9	2013	The amygdala between sensation and affect: a role in pain.	2049-9256	2049-9256	Journal of Molecular Psychiatry	Springer Science and Business Media LLC	Springer	NA	25408902	Medical research	Psychology and Cognitive Sciences	health	en	journal-article	1477.7676	fr	NA	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;hybrid	cc-by	cc-by	PubMed Central;univOAK
10.3389/fchem.2013.00043	2014	The hygroscopic behavior of plant fibers: a review.	2296-2646	2296-2646	Frontiers in Chemistry	Frontiers Media SA	Frontiers	hal-01007368	24790971	Chemistry	Chemical Sciences	health	en	journal-article	1768.5848	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	HAL;PubMed Central
10.1186/2051-4190-23-9	2013	RNA: a possible contributor to the ‘missing heritability’.	2051-4190	2051-4190	Basic and Clinical Andrology	Springer Science and Business Media LLC	Springer	inserm-00904366	25780571	Medical research	Clinical Sciences	health	en	journal-article	1477.7676	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	HAL;PubMed Central
10.3390/diagnostics3020271	2013	Quantification of Right and Left Ventricular Function in Cardiac MR Imaging: Comparison of Semiautomatic and Manual Segmentation Algorithms.	2075-4418	2075-4418	Diagnostics	MDPI AG	MDPI	NA	26835680	Medical research	Clinical Sciences	health	en	journal-article	1103.3353	es;fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	CiteSeerX;PubMed Central;mdpi.com;minerva.usc.es;pdfs.semanticscholar.org
10.1097/qai.0b013e318282537f	2013	Direct quantification of cell-associated HIV DNA in isolated rectal and blood memory CD4 T cells revealed their similar and low infection levels in long-term treated HIV-infected patients.	1525-4135	1525-4135	JAIDS Journal of Acquired Immune Deficiency Syndromes	Ovid Technologies (Wolters Kluwer Health)	Wolters Kluwer Health	NA	23274932	Medical research	Public Health and Health Services	health	en	journal-article	NA	fr	NA	FALSE	FALSE	FALSE	2021Q4	closed	closed	NA	NA	NA
10.3390/pathogens2010071	2013	Immune evasion, immunopathology and the regulation of the immune system.	2076-0817	2076-0817	Pathogens	MDPI AG	MDPI	hal-01118543	25436882	Medical research	Other Medical and Health Sciences	health	en	journal-article	1074.8644	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	HAL;PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.5936/csbj.201303008	2013	A network-based approach for predicting Hsp27 knock-out targets in mouse skeletal muscles.	2001-0370	2001-0370	Computational and Structural Biotechnology Journal	Elsevier BV	Elsevier	hal-01189801	24688716	Biology (fond.)	Engineering;Other Medical and Health Sciences	health	en	journal-article	1790.1709	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	HAL;PubMed Central;pdfs.semanticscholar.org
10.1016/j.rinim.2013.04.001	2013	Sequence analysis of a normalized cDNA library of Mytilus edulis hemocytes exposed to Vibrio splendidus LGP32 strain.	2211-2839	2211-2839	Results in Immunology	Elsevier BV	Elsevier	NA	24600557	Biology (fond.)	Agricultural and Veterinary Sciences	health	en	journal-article	2384.8283	ca;fr	NA	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;hybrid	cc-by-nc-nd	no license	PubMed Central
10.3390/vaccines1030293	2013	A Multidisciplinary Research Agenda for Understanding Vaccine-Related Decisions.	2076-393X	2076-393X	Vaccines	MDPI AG	MDPI	NA	26344114	Medical research	Agricultural and Veterinary Sciences	health	en	journal-article	1395.6300	fr;gb;au	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	CiteSeerX;PubMed Central;mdpi.com;pdfs.semanticscholar.org;researchonline.lshtm.ac.uk;ses.library.usyd.edu.au
10.1140/epjc/s10052-013-2518-3	2013	Improved luminosity determination in pp collisions at [Formula: see text] using the ATLAS detector at the LHC.	1434-6044,1434-6052	1434-6044	The European Physical Journal C	Springer Science and Business Media LLC	Springer	NA	25814867	Physical sciences, Astronomy	Physical Sciences	health	en	journal-article	0.0000	at;us;tr;br;co;nl;ro;gb;se;ca;fr;no;ge;am;pt;ch;za;pl;si;es;de;cn;dk;cl;by;gr;it;au;ar;il;az;jp;cz;ma;sk;tw;rs	775685019	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;other	cc-by	cc-by	DiVA.org;PubMed Central;US Office of Scientific and Technical Information;arXiv;authors.library.caltech.edu;cds.cern.ch;dare.uva.nl;digibug.ugr.es;digital.library.adelaide.edu.au;dnet;dspace.calstate.edu;dspace.mit.edu;eprints.gla.ac.uk;repositorium.sdum.uminho.pt;repository.ubn.ru.nl;ri.conicet.gov.ar;ruj.uj.edu.pl;sedici.unlp.edu.ar;vinar.vin.bg.ac.rs;wrap.warwick.ac.uk
10.1186/2051-4190-23-2	2013	Erectile function after permanent 125I prostate brachytherapy for localized prostate cancer.	2051-4190	2051-4190	Basic and Clinical Andrology	Springer Science and Business Media LLC	Springer	NA	25780566	Medical research	Clinical Sciences	health	en	journal-article	1477.7676	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central
10.3389/fcell.2013.00003	2013	Integrating microRNAs into the complexity of gonadotropin signaling networks.	2296-634X	2296-634X	Frontiers in Cell and Developmental Biology	Frontiers Media SA	Frontiers	hal-01136284	25364708	Biology (fond.)	Other Biological Sciences;Other Medical and Health Sciences	health	en	journal-article	1815.8692	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	HAL;PubMed Central
10.1007/s13546-012-0566-6	2012	[New therapeutic strategies in ARDS].	1624-0693,1951-6959	1624-0693	Réanimation	Lavoisier	Lavoisier	NA	32288733	Medical research	Clinical Sciences	health	fr	journal-article	NA	fr	NA	TRUE	FALSE	FALSE	2021Q4	repository	green	NA	other	PubMed Central
10.1097/qai.0b013e3182821821	2013	Mortality, AIDS-morbidity, and loss to follow-up by current CD4 cell count among HIV-1-infected adults receiving antiretroviral therapy in Africa and Asia: data from the ANRS 12222 collaboration.	1525-4135	1525-4135	JAIDS Journal of Acquired Immune Deficiency Syndromes	Ovid Technologies (Wolters Kluwer Health)	Wolters Kluwer Health	NA	23274931	Medical research	Clinical Sciences	health	en	journal-article	NA	fr	NA	TRUE	FALSE	FALSE	2021Q4	repository	green	NA	no license	PubMed Central
10.3390/pathogens2020288	2013	From in vitro to in vivo Models of Bacterial Biofilm-Related Infections.	2076-0817	2076-0817	Pathogens	MDPI AG	MDPI	pasteur-01385428	25437038	Medical research	Other Medical and Health Sciences	health	en	journal-article	1074.8644	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	CiteSeerX;HAL;PubMed Central;pdfs.semanticscholar.org
10.1186/2194-7511-1-21	2013	Evaluating depressive symptoms in hypomanic and manic episodes using a structured diagnostic tool: validation of a new Mini International Neuropsychiatric Interview (M.I.N.I.) module for the DSM-5 ‘With Mixed Features’ specifier.	2194-7511	2194-7511	International Journal of Bipolar Disorders	Springer Science and Business Media LLC	Springer	NA	25505685	Social sciences	Clinical Sciences	health	en	journal-article	1559.8200	dk;fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central
10.3390/plants2040699	2013	The Role of Temperature in the Growth and Flowering of Geophytes.	2223-7747	2223-7747	Plants	MDPI AG	MDPI	NA	27137399	Biology (fond.)	Biochemistry and Cell Biology	health	en	journal-article	1111.9713	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central;pdfs.semanticscholar.org
10.1140/epjc/s10052-013-2631-3	2013	Measurement of J/ψ polarization in pp collisions at [Formula: see text].	1434-6044,1434-6052	1434-6044	The European Physical Journal C	Springer Science and Business Media LLC	Springer	NA	25814848	Physical sciences, Astronomy	Physical Sciences	health	en	journal-article	0.0000	es;us;br;de;ie;cn;ch;ua;gb;pl;nl;ro;fr;it	NA	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;other	cc-by	cc-by	PubMed Central;US Office of Scientific and Technical Information;arXiv;cds.cern.ch;dspace.mit.edu;eprints.gla.ac.uk;wrap.warwick.ac.uk;www.zora.uzh.ch
10.1186/2193-9616-1-8	2013	Modeling bioavailability to organs protected by biological barriers.	2193-9616	2193-9616	In Silico Pharmacology	Springer Science and Business Media LLC	Springer	NA	25505653	Medical research	Pharmacology and Pharmaceutical Sciences	health	en	journal-article	NA	fr	NA	TRUE	FALSE	FALSE	2021Q4	repository	green	NA	cc-by	PubMed Central
10.4137/ijtr.s11717	2013	Induction of TDO2 and IDO2 in Liver by High-Fat Feeding in Mice: Discrepancies with Human Obesity.	1178-6469,1178-6469	1178-6469	International Journal of Tryptophan Research	SAGE Publications	SAGE Publications	NA	26882470	Medical research	Biochemistry and Cell Biology	health	en	journal-article	566.9791	fr;au	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by-nc	cc-by-nc	PubMed Central
10.1093/conphys/cot004	2013	Integrating oxidative ecology into conservation physiology.	2051-1434	2051-1434	Conservation Physiology	Oxford University Press (OUP)	Oxford University Press	NA	27293588	Biology (fond.)	Other Biological Sciences	health	en	journal-article	1594.0591	de;cl;fr;us	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central;darchive.mblwhoilibrary.org;pdfs.semanticscholar.org
10.5936/csbj.201302013	2013	Automated detection of structural alerts (chemical fragments) in (eco)toxicology.	2001-0370	2001-0370	Computational and Structural Biotechnology Journal	Elsevier BV	Elsevier	hal-01023826	24688706	Medical research	Engineering;Other Medical and Health Sciences	health	en	journal-article	1790.1709	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	HAL;PubMed Central
10.1186/2110-5820-2-50	2012	Chronic alcohol exposure, infection, extended circulating white blood cells differentiated by flow cytometry and neutrophil CD64 expression: a prospective, descriptive study of critically ill medical patients.	2110-5820	2110-5820	Annals of Intensive Care	Springer Science and Business Media LLC	Springer	inserm-00771478	23272900	Medical research	Clinical Sciences;Public Health and Health Services	health	en	journal-article	1680.2200	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	HAL;PubMed Central
10.1140/epjc/s10052-013-2432-8	2013	Measurement of kT splitting scales in W→ℓν events at [Formula: see text] with the ATLAS detector.	1434-6044,1434-6052	1434-6044	The European Physical Journal C	Springer Science and Business Media LLC	Springer	NA	25814860	Physical sciences, Astronomy	Physical Sciences	health	en	journal-article	0.0000	at;us;tr;br;co;nl;ro;gb;se;ca;fr;no;ge;am;pt;ch;za;pl;si;es;de;cn;dk;cl;by;gr;it;au;ar;il;az;jp;cz;ma;sk;tw;rs	775685019	TRUE	FALSE	FALSE	2021Q4	publisher;repository	green;other	cc-by	cc-by	DiVA.org;PubMed Central;US Office of Scientific and Technical Information;arXiv;bib-pubdb1.desy.de;cds.cern.ch;dare.uva.nl;digital.library.adelaide.edu.au;dnet;dspace.calstate.edu;dspace.mit.edu;eprints.gla.ac.uk;openaccess.dogus.edu.tr;repositorium.sdum.uminho.pt;repository.ubn.ru.nl;ri.conicet.gov.ar;ruj.uj.edu.pl;sedici.unlp.edu.ar;vinar.vin.bg.ac.rs;wrap.warwick.ac.uk
10.3389/fbioe.2013.00011	2013	Synergistic Synthetic Biology: Units in Concert.	2296-4185	2296-4185	Frontiers in Bioengineering and Biotechnology	Frontiers Media SA	Frontiers	NA	25022769	Medical research	Engineering	health	en	journal-article	1698.6984	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central
10.3389/fchem.2013.00013	2013	Electrochemical promotion of propane oxidation on Pt deposited on a dense β″-Al2O3 ceramic Ag(+) conductor.	2296-2646	2296-2646	Frontiers in Chemistry	Frontiers Media SA	Frontiers	NA	24790942	Chemistry	Chemical Sciences	health	en	journal-article	1768.5848	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central
10.3390/pathogens2020264	2013	Henipavirus infections: lessons from animal models.	2076-0817	2076-0817	Pathogens	MDPI AG	MDPI	NA	25437037	Medical research	Other Medical and Health Sciences	health	en	journal-article	1074.8644	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	CiteSeerX;PubMed Central;pdfs.semanticscholar.org
10.3390/pathogens3010014	2013	Metabolism of cholesterol and bile acids by the gut microbiota.	2076-0817	2076-0817	Pathogens	MDPI AG	MDPI	hal-01601960	25437605	Biology (fond.)	Other Medical and Health Sciences	health	en	journal-article	1074.8644	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	HAL;PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.3390/biology2030894	2013	Structural Sampling of Glycan Interaction Profiles Reveals Mucosal Receptors for Fimbrial Adhesins of Enterotoxigenic Escherichia coli.	2079-7737	2079-7737	Biology	MDPI AG	MDPI	NA	24833052	Biology (fond.)	NA	health	en	journal-article	1109.3825	de;ie;be;nl;fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	CiteSeerX;PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.3390/membranes3020044	2013	Experimental Study of Membrane Fouling during Crossflow Microfiltration of Yeast and Bacteria Suspensions: Towards an Analysis at the Microscopic Level.	2077-0375	2077-0375	Membranes	MDPI AG	MDPI	NA	24958619	Biology (fond.)	Engineering	health	en	journal-article	737.9951	fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	CiteSeerX;PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.1016/j.bbi.2012.12.013	2013	Lipopolysaccharide-induced anhedonia is abolished in male serotonin transporter knockout rats: an intracranial self-stimulation study.	0889-1591	0889-1591	Brain, Behavior, and Immunity	Elsevier BV	Elsevier	NA	23274951	Medical research	Psychology and Cognitive Sciences	health	en	journal-article	NA	fr;nl	NA	FALSE	FALSE	FALSE	2021Q4	closed	closed	NA	NA	NA
10.3389/fchem.2013.00015	2013	Self-assembly of a helical zinc-europium complex: speciation in aqueous solution and luminescence.	2296-2646	2296-2646	Frontiers in Chemistry	Frontiers Media SA	Frontiers	NA	24790943	Chemistry	Chemical Sciences	health	en	journal-article	1768.5848	ch;fr	NA	TRUE	TRUE	TRUE	2021Q4	publisher;repository	green;gold	cc-by	cc-by	PubMed Central;infoscience.tind.io

Statistiques générales

# Sous df sans les variables qui prennent trop de valeurs différentes et ralentissent le knit du rapport
sub_df <- bso_data[,c("year","journal_issns","journal_issn_l","journal_name","publisher","publisher_dissemination","hal_id", "bso_classification","bsso_classification","domains","lang","genre","amount_apc_EUR","detected_countries","is_oa","journal_is_in_doaj","journal_is_oa","oa_host_type","oa_colors","licence_publisher","licence_repositories")]

# Summarytools
summarytools::dfSummary(sub_df, style = "grid", graph.magnif = 0.75, valid.col = FALSE, tmp.img.dir = "/tmp", max.tbl.height = 800, headings=FALSE, method = "render")

No	Variable	Stats / Values	Freqs (% of Valid)	Graph	Missing
1	year [integer]	Mean (sd) : 2016.9 (2.6) min < med < max: 1884 < 2017 < 2103 IQR (CV) : 4 (0)	57 distinct values		472 (0.0%)
2	journal_issns [character]	1. 0302-9743,1611-3349 2. 1932-6203 3. 2045-2322 4. 0004-6361,1432-0746 5. 0151-9638 6. 0732-183X,1527-7755 7. 1556-5068 8. 0006-4971,1528-0020 9. 2041-1723 10. 0031-9007,1079-7114 [ 33716 others ]	14302 ( 1.2%) 10340 ( 0.9%) 8328 ( 0.7%) 5694 ( 0.5%) 5626 ( 0.5%) 5437 ( 0.5%) 4773 ( 0.4%) 4757 ( 0.4%) 4074 ( 0.3%) 3883 ( 0.3%) 1097132 (94.2%)		175851 (13.1%)
3	journal_issn_l [character]	1. 0302-9743 2. 1932-6203 3. 2045-2322 4. 0004-6361 5. 0151-9638 6. 0732-183X 7. 1556-5068 8. 0006-4971 9. 2041-1723 10. 0031-9007 [ 29782 others ]	14302 ( 1.2%) 10340 ( 0.9%) 8328 ( 0.7%) 5694 ( 0.5%) 5626 ( 0.5%) 5437 ( 0.5%) 4773 ( 0.4%) 4757 ( 0.4%) 4074 ( 0.3%) 3883 ( 0.3%) 1097106 (94.2%)		175877 (13.1%)
4	journal_name [character]	1. Lecture Notes in Computer 2. Scientific Reports 3. PLOS ONE 4. Astronomy & Astrophysics 5. Annales de Dermatologie e 6. Journal of Clinical Oncol 7. SSRN Electronic Journal 8. Blood 9. Physical Review B 10. Nature Communications [ 63314 others ]	10051 ( 0.8%) 8328 ( 0.6%) 6610 ( 0.5%) 5694 ( 0.4%) 5626 ( 0.4%) 5437 ( 0.4%) 4773 ( 0.4%) 4757 ( 0.4%) 4530 ( 0.3%) 4074 ( 0.3%) 1260852 (95.5%)		19465 (1.5%)
5	publisher [character]	1. Elsevier BV 2. Springer Science and Busi 3. Wiley 4. OpenEdition 5. IEEE 6. Elsevier 7. Informa UK Limited 8. Springer International Pu 9. Oxford University Press ( 10. CAIRN [ 6260 others ]	252610 (18.8%) 89344 ( 6.7%) 66604 ( 5.0%) 54751 ( 4.1%) 50670 ( 3.8%) 42339 ( 3.2%) 31552 ( 2.4%) 27033 ( 2.0%) 25512 ( 1.9%) 24550 ( 1.8%) 675216 (50.4%)		16 (0.0%)
6	publisher_dissemination [character]	1. Elsevier 2. Springer-Nature 3. Wiley 4. OpenEdition 5. IEEE 6. CAIRN 7. Springer 8. Informa 9. Oxford University Press 10. MDPI [ 5169 others ]	337041 (25.1%) 140750 (10.5%) 92511 ( 6.9%) 85632 ( 6.4%) 66562 ( 5.0%) 62889 ( 4.7%) 37882 ( 2.8%) 33793 ( 2.5%) 31919 ( 2.4%) 22938 ( 1.7%) 428280 (32.0%)		0 (0.0%)
7	hal_id [character]	1. hal 2. ebg 3. halshs-01523288 4. hal-01483543 5. hal-02431782 6. hal-02559873 7. hal-03321491 8. hal-02972769 9. halshs-02338116 10. hal-01503066 [ 228330 others ]	598 ( 0.3%) 12 ( 0.0%) 8 ( 0.0%) 7 ( 0.0%) 7 ( 0.0%) 7 ( 0.0%) 7 ( 0.0%) 6 ( 0.0%) 6 ( 0.0%) 5 ( 0.0%) 234071 (99.7%)		1105463 (82.5%)
8	bso_classification [character]	1. Biology (fond.) 2. Chemistry 3. Computer and informatio 4. Earth, Ecology, Energy a 5. Engineering 6. Humanities 7. Mathematics 8. Medical research 9. Physical sciences, Astron 10. Social sciences 11. unknown	199124 (14.9%) 63897 ( 4.8%) 94926 ( 7.1%) 106734 ( 8.0%) 47081 ( 3.5%) 115858 ( 8.6%) 34696 ( 2.6%) 437807 (32.7%) 156411 (11.7%) 83613 ( 6.2%) 50 ( 0.0%)		0 (0.0%)
9	bsso_classification [character]	1. Clinical Sciences 2. Chemical Sciences 3. Multidisciplinary 4. Oncology and Carcinogenes 5. Psychology and Cognitive 6. Agricultural and Veterina 7. Public Health and Health 8. Other Medical and Health 9. Engineering 10. Cardiorespiratory Medicin [ 1580 others ]	61504 (17.4%) 29877 ( 8.5%) 25349 ( 7.2%) 17608 ( 5.0%) 17373 ( 4.9%) 14598 ( 4.1%) 13969 ( 4.0%) 13144 ( 3.7%) 12659 ( 3.6%) 12589 ( 3.6%) 134474 (38.1%)		987053 (73.6%)
10	domains [character]	1. health	356935 (100.0%)		983262 (73.4%)
11	lang [character]	1. en 2. fr 3. es 4. de 5. it 6. pt 7. ja 8. ru 9. pl 10. nl [ 74 others ]	1074501 (80.3%) 243119 (18.2%) 6767 ( 0.5%) 4107 ( 0.3%) 2946 ( 0.2%) 2866 ( 0.2%) 1294 ( 0.1%) 499 ( 0.0%) 410 ( 0.0%) 308 ( 0.0%) 1921 ( 0.1%)		1459 (0.1%)
12	genre [character]	1. book 2. book-chapter 3. journal-article 4. preprint 5. proceedings	8050 ( 0.6%) 108424 ( 8.1%) 1122166 (83.7%) 12320 ( 0.9%) 89235 ( 6.7%)		2 (0.0%)
13	amount_apc_EUR [numeric]	Mean (sd) : 1791.7 (1053.5) min < med < max: 0 < 1882.7 < 13975 IQR (CV) : 1218.6 (0.6)	15000 distinct values		974813 (72.7%)
14	detected_countries [character]	1. fr 2. us;fr 3. fr;us 4. de;fr 5. it;fr 6. fr;it 7. fr;gb 8. fr;cn 9. gb;fr 10. ca;fr [ 82850 others ]	344964 (50.3%) 14506 ( 2.1%) 8647 ( 1.3%) 6933 ( 1.0%) 6776 ( 1.0%) 6135 ( 0.9%) 6030 ( 0.9%) 5846 ( 0.9%) 5353 ( 0.8%) 5198 ( 0.8%) 275399 (40.2%)		654410 (48.8%)
15	is_oa [logical]	1. FALSE 2. TRUE	651310 (48.6%) 688887 (51.4%)		0 (0.0%)
16	journal_is_in_doaj [logical]	1. FALSE 2. TRUE	1160712 (86.6%) 179485 (13.4%)		0 (0.0%)
17	journal_is_oa [logical]	1. FALSE 2. TRUE	1128442 (84.2%) 211755 (15.8%)		0 (0.0%)
18	oa_host_type [character]	1. closed 2. publisher 3. publisher;repository 4. repository	651310 (48.6%) 183863 (13.7%) 278419 (20.8%) 226605 (16.9%)		0 (0.0%)
19	oa_colors [character]	1. closed 2. diamond 3. gold 4. green 5. green;diamond 6. green;gold 7. green;hybrid 8. green;other 9. hybrid 10. other	651310 (48.6%) 23406 ( 1.7%) 16540 ( 1.2%) 226605 (16.9%) 25139 ( 1.9%) 127884 ( 9.5%) 81543 ( 6.1%) 43853 ( 3.3%) 72090 ( 5.4%) 71827 ( 5.4%)		0 (0.0%)
20	licence_publisher [character]	1. cc-by 2. cc-by-nc 3. cc-by-nc-nd 4. cc-by-nc-nd;cc-by-nc-sa 5. cc-by-nc-sa 6. cc-by-nc;cc-by-nd 7. cc-by-nc;cc-by-sa 8. cc-by-nd 9. cc-by-sa 10. no license 11. other	171869 (37.2%) 23948 ( 5.2%) 59720 (12.9%) 4 ( 0.0%) 5423 ( 1.2%) 2 ( 0.0%) 1 ( 0.0%) 689 ( 0.1%) 1921 ( 0.4%) 188833 (40.8%) 9872 ( 2.1%)		877915 (65.5%)
21	licence_repositories [character]	1. no license 2. cc-by 3. cc-by-nc-nd 4. cc-by-nc 5. cc-by-nc-sa 6. other 7. cc-by-sa 8. cc-by-nd 9. cc-by-nc-nd;cc-by-nc-sa 10. cc-by-nc;cc-by-nd [ 2 others ]	299033 (59.2%) 142911 (28.3%) 30556 ( 6.1%) 19088 ( 3.8%) 4935 ( 1.0%) 4551 ( 0.9%) 2131 ( 0.4%) 1416 ( 0.3%) 306 ( 0.1%) 49 ( 0.0%) 48 ( 0.0%)		835173 (62.3%)

Attention : les montants des APC ont 4 décimales après la virgule.

• Cas particulier des APC à 0 euro

# Sous-base avec uniquement les APC de 0 euro
apc_0 <- bso_data %>% filter(amount_apc_EUR == 0)

52050 articles ont des APC à 0 euro, ce qui représente 3.88% de la base totale. Voici les statuts associés à ces articles avec leur fréquence (résultats obtenus sur une sous-base qui filtre les montants des APC à 0 : filter(amount_apc_EUR == 0)). Les principales “couleurs” sont donc green;diamond et diamond.

# On affiche les occurrences des couleurs OA dans la sous-base des APC==0
apc_0_colors <- apc_0 %>% group_by(oa_colors) %>% summarise(frequence = n()) %>% mutate(pourcentage = round(frequence/sum(frequence)*100, 2)) %>% arrange(desc(frequence))
kable(apc_0_colors, format = "html") %>% 
  kable_styling(bootstrap_options = c("striped", "hover"), 
                full_width = F, 
                html_font = "sans-serif")

oa_colors	frequence	pourcentage
green;diamond	25139	48.30
diamond	23406	44.97
other	1880	3.61
green;other	1625	3.12

• Cas particulier des APC manquants

# Sous-base avec uniquement les APC de 0 euro
apc_NA <- bso_data %>% filter(is.na(amount_apc_EUR))

974813 articles ont des APC non renseignés, ce qui représente 72.74% de la base totale. Voici les statuts associés à ces articles avec leur fréquence (résultats obtenus sur une sous-base qui filtre les montants des APC manquants : filter(is.na(amount_apc_EUR))). Les principales “couleurs” sont donc closed et green.

# On affiche les occurrences des couleurs OA dans la sous-base des APC==0
apc_NA_colors <- apc_NA %>% group_by(oa_colors) %>% summarise(frequence = n()) %>% mutate(pourcentage = round(frequence/sum(frequence)*100, 2)) %>% arrange(desc(frequence))
kable(apc_NA_colors, format = "html") %>% 
  kable_styling(bootstrap_options = c("striped", "hover"), 
                full_width = F, 
                html_font = "sans-serif")

oa_colors	frequence	pourcentage
closed	651310	66.81
green	226605	23.25
other	61763	6.34
green;other	34720	3.56
green;gold	253	0.03
gold	135	0.01
green;hybrid	14	0.00
hybrid	13	0.00

Résumé du nombre de valeurs manquantes

# On compte le nombre de valeurs manquantes
nb_NA <- as.data.frame(apply(is.na(bso_data), 2, sum)) %>% 
                       rename(`nombre de NA` = `apply(is.na(bso_data), 2, sum)`) %>%
                       mutate(pourcentage = `nombre de NA`/nrow(bso_data)*100) %>% 
                       mutate(pourcentage = round(pourcentage, 2))
nb_NA %>% datatable(options=list(pageLength=ncol(bso_data), searching=F), width = '60%')

Nombre de publications par année

Échantillon complet

# Histogramme du nombre de publication
histogram <- ggplot(bso_data) +
  geom_histogram(aes(x = year, text = paste("\n bso_data :", as.character(year))), bins = 84L, fill = "#0C4C8A") +
  labs(
    x = "Date",
    y = "Publications",
    title = "Évolution du nombre de publications"
  ) +
  theme_minimal()
ggplotly(histogram)

2013-2020

# Histogramme du nombre de publication
histogram <- bso_data %>% filter(year > 2012 & year < 2021) %>% 
    ggplot() +
  geom_histogram(aes(x = year, text = paste("\n bso_data :", as.character(year))), bins = 84L, fill = "#0C4C8A") +
  labs(
    x = "Date",
    y = "Publications",
    title = "Évolution du nombre de publications"
  ) +
  theme_minimal()
ggplotly(histogram)

Nombre d’articles publiés par les 20 plus gros éditeurs

# Table du nombre d'articles par éditeur
t0 <- as.data.frame(table(bso_data$publisher_dissemination)) %>% mutate(pourcentage = round(Freq/sum(Freq)*100, 2)) %>% arrange(desc(Freq))

# Graphique
barplot <- t0[c(1:20),] %>% 
    mutate(Var1 = fct_reorder(Var1, Freq)) %>%
    ggplot(aes(x = Var1, y = Freq)) +
  geom_bar(stat="identity", fill = "#0C4C8A") +
  geom_text(aes(x = Var1, y = Freq+0.07*max(Freq)), label = paste(t0[c(1:20),]$pourcentage, "%", sep = ""),
            colour = "black", fontface = "bold") +
  labs(x = "Éditeur", y = "Nombre d'articles",
       title = "Les 20 éditeurs ayant publié le plus d'articles") +
  coord_flip() +
  theme_minimal()
ggplotly(barplot) 

---

II - Sous-base filtrée

# Sous-base filtrée sur les publications gold et les années de 2013 à 2020
bso_filtre <- bso_data %>% select(doi, title, journal_issns, journal_issn_l, publisher, publisher_dissemination, oa_colors, year, lang, amount_apc_EUR, detected_countries) %>% 
    filter(oa_colors == "gold" | oa_colors == "green;gold",
           year > 2012 & year < 2021)

# On exporte la sous-base créée
rio::export(bso_filtre, "../data/interim/bso_filtre.csv")

La sous-base ‘bso_filtre’ correspond à une extraction du jeu entier du BSO avec les critères suivants :

• le statut OA est “gold” ou “green;gold” ;
• l’année de publication va de 2013 à 2020 inclus ;
• nous ne retenons que les variables qui nous intéressent.

La sous-base ainsi obtenue contient 124805 observations, ce qui correspond à 9.31% de la base initiale. Les 10 variables retenues dans cette extraction sont les suivantes : doi, title, journal_issns, journal_issn_l, publisher, publisher_dissemination, oa_colors, year, lang, amount_apc_EUR, detected_countries.

Statistiques de la sous-base

# Summarytools
summarytools::dfSummary(bso_filtre, style = "grid", graph.magnif = 0.75, valid.col = FALSE, tmp.img.dir = "/tmp", max.tbl.height = 800, headings=FALSE, method = "render")

No	Variable	Stats / Values	Freqs (% of Valid)	Graph	Missing
1	doi [character]	1. 10.1001/jamanetworkopen.2 2. 10.1001/jamanetworkopen.2 3. 10.1001/jamanetworkopen.2 4. 10.1001/jamanetworkopen.2 5. 10.1001/jamanetworkopen.2 6. 10.1001/jamanetworkopen.2 7. 10.1001/jamanetworkopen.2 8. 10.1001/jamanetworkopen.2 9. 10.1001/jamanetworkopen.2 10. 10.1001/jamanetworkopen.2 [ 124795 others ]	1 ( 0.0%) 1 ( 0.0%) 1 ( 0.0%) 1 ( 0.0%) 1 ( 0.0%) 1 ( 0.0%) 1 ( 0.0%) 1 ( 0.0%) 1 ( 0.0%) 1 ( 0.0%) 124795 (100.0%)		0 (0.0%)
2	title [character]	1. Preface 2. Editorial 3. (Empty string) 4. Blockchain protocols in c 5. Book Reviews 6. Endorsement of Internatio 7. The Authors Reply. 8. Computational science: sh 9. Entomological determinant 10. Introducing high school s [ 124609 others ]	18 ( 0.0%) 15 ( 0.0%) 5 ( 0.0%) 4 ( 0.0%) 4 ( 0.0%) 4 ( 0.0%) 4 ( 0.0%) 3 ( 0.0%) 3 ( 0.0%) 3 ( 0.0%) 124742 (99.9%)		0 (0.0%)
3	journal_issns [character]	1. 1932-6203 2. 2045-2322 3. 2041-1723 4. 1742-6588,1742-6596 5. 2405-8963 6. 1664-302X 7. 1094-4087 8. 1422-0067 9. 1664-3224 10. 1949-2553 [ 3311 others ]	9830 ( 7.9%) 7335 ( 5.9%) 3077 ( 2.5%) 2377 ( 1.9%) 1959 ( 1.6%) 1420 ( 1.1%) 1370 ( 1.1%) 1297 ( 1.0%) 1244 ( 1.0%) 1057 ( 0.8%) 93807 (75.2%)		32 (0.0%)
4	journal_issn_l [character]	1. 1932-6203 2. 2045-2322 3. 2041-1723 4. 1742-6588 5. 2405-8963 6. 1664-302X 7. 1094-4087 8. 1422-0067 9. 1664-3224 10. 1949-2553 [ 3031 others ]	9830 ( 7.9%) 7335 ( 5.9%) 3077 ( 2.5%) 2696 ( 2.2%) 1959 ( 1.6%) 1420 ( 1.1%) 1370 ( 1.1%) 1297 ( 1.0%) 1244 ( 1.0%) 1057 ( 0.8%) 93488 (74.9%)		32 (0.0%)
5	publisher [character]	1. Springer Science and Busi 2. Public Library of Science 3. MDPI AG 4. Frontiers Media SA 5. Elsevier BV 6. Multidisciplinary Digital 7. IOP Publishing 8. Copernicus GmbH 9. Elsevier 10. Wiley [ 538 others ]	26038 (20.9%) 12308 ( 9.9%) 12107 ( 9.7%) 11088 ( 8.9%) 8224 ( 6.6%) 4999 ( 4.0%) 4300 ( 3.4%) 4034 ( 3.2%) 3248 ( 2.6%) 3036 ( 2.4%) 35420 (28.4%)		3 (0.0%)
6	publisher_dissemination [character]	1. Springer-Nature 2. MDPI 3. Public Library of Science 4. Frontiers 5. Elsevier 6. IOP Publishing 7. Copernicus 8. Springer 9. Wiley 10. Informa [ 476 others ]	23362 (18.7%) 17106 (13.7%) 12519 (10.0%) 12184 ( 9.8%) 11480 ( 9.2%) 4300 ( 3.4%) 4034 ( 3.2%) 4002 ( 3.2%) 3760 ( 3.0%) 2941 ( 2.4%) 29117 (23.3%)		0 (0.0%)
7	oa_colors [character]	1. gold 2. green;gold	13866 (11.1%) 110939 (88.9%)		0 (0.0%)
8	year [integer]	Mean (sd) : 2017.3 (2.2) min < med < max: 2013 < 2018 < 2020 IQR (CV) : 4 (0)	2013 : 8918 ( 7.1%) 2014 : 10289 ( 8.2%) 2015 : 12266 ( 9.8%) 2016 : 13667 (11.0%) 2017 : 15772 (12.6%) 2018 : 17212 (13.8%) 2019 : 20403 (16.3%) 2020 : 26278 (21.1%)		0 (0.0%)
9	lang [character]	1. en 2. fr 3. pt 4. ja 5. es 6. de 7. id 8. it 9. uk 10. ar [ 10 others ]	124375 (99.7%) 171 ( 0.1%) 54 ( 0.0%) 50 ( 0.0%) 45 ( 0.0%) 39 ( 0.0%) 26 ( 0.0%) 9 ( 0.0%) 7 ( 0.0%) 6 ( 0.0%) 19 ( 0.0%)		4 (0.0%)
10	amount_apc_EUR [numeric]	Mean (sd) : 1700 (731.6) min < med < max: 4.4 < 1605.2 < 7140 IQR (CV) : 699.1 (0.4)	10171 distinct values		68 (0.1%)
11	detected_countries [character]	1. fr 2. us;fr 3. fr;us 4. de;fr 5. it;fr 6. fr;gb 7. fr;it 8. ca;fr 9. gb;fr 10. fr;cn [ 18642 others ]	36585 (38.3%) 2413 ( 2.5%) 1590 ( 1.7%) 1278 ( 1.3%) 1106 ( 1.2%) 1079 ( 1.1%) 1008 ( 1.1%) 895 ( 0.9%) 882 ( 0.9%) 828 ( 0.9%) 47865 (50.1%)		29276 (23.5%)

Résumé du nombre de valeurs manquantes

# On compte le nombre de valeurs manquantes
nb_NA <- as.data.frame(apply(is.na(bso_filtre), 2, sum)) %>% 
                       rename(`nombre de NA` = `apply(is.na(bso_filtre), 2, sum)`) %>%
                       mutate(pourcentage = `nombre de NA`/nrow(bso_filtre)*100) %>% 
                       mutate(pourcentage = round(pourcentage, 2))
nb_NA %>% datatable(options=list(pageLength=ncol(bso_filtre), searching=F), width = '60%')

Les 20 plus gros éditeurs sur toute la période 2013-2020

En nombre d’articles

# Table du nombre d'articles par éditeur
t1 <- as.data.frame(table(bso_filtre$publisher_dissemination)) %>% mutate(pourcentage = round(Freq/sum(Freq)*100, 2)) %>% arrange(desc(Freq))

# Graphique
barplot <- t1[c(1:20),] %>% 
    mutate(Var1 = fct_reorder(Var1, Freq)) %>%
    ggplot(aes(x = Var1, y = Freq)) +
  geom_bar(stat="identity", fill = "#112446") +
  geom_text(aes(x = Var1, y = Freq+0.07*max(Freq)), label = paste(t1[c(1:20),]$pourcentage, "%", sep = ""),
            colour = "black", fontface = "bold") +
  labs(
    x = "Éditeur",
    y = "Nombre d'articles",
    title = "Les 20 éditeurs ayant publié le plus d'articles"
  ) +
  coord_flip() +
  theme_minimal()
ggplotly(barplot)

Le graphique ci-dessus montre que l’éditeur Springer a publié le plus d’articles entre 2013 et 2020, un total de 23 362 articles soit 18.72% des publications.

En somme des APC

# Table du nombre d'articles par éditeur
t2 <- bso_filtre %>% group_by(publisher_dissemination) %>% summarise(sum_APC = sum(amount_apc_EUR)) %>% 
    mutate(pourcentage = round(sum_APC/sum(bso_filtre$amount_apc_EUR, na.rm = TRUE)*100, 2)) %>% arrange(desc(sum_APC))

# Nombre de NA pour la variable du montant des APC
n <- bso_filtre %>% count(is.na(amount_apc_EUR))

# 20 plus gros éditeurs en somme des APC de 2013 à 2020
top20_publish <- t2[c(1:20),1]
#test <- as.vector(t(top20_publish))

# Graphique
barplot <- t2[c(1:20),] %>% 
    mutate(publisher_dissemination = fct_reorder(publisher_dissemination, sum_APC)) %>%
    ggplot(aes(x = publisher_dissemination, y = sum_APC)) +
  geom_bar(stat="identity", fill = "#990000") +
  geom_text(aes(x = publisher_dissemination, y = sum_APC+0.09*max(sum_APC)), label = paste(t2[c(1:20),]$pourcentage, "%", sep = ""),
            colour = "black", fontface = "bold") +
  labs(
    x = "Éditeur",
    y = "Somme des APC",
    title = "Les 20 éditeurs ayant cumulé le plus d'APC"
  ) +
  coord_flip() +
  theme_minimal()
ggplotly(barplot) %>% 
    layout(title = list(text = paste0("Les 20 éditeurs ayant cumulé le plus d'APC",
                                    '<br>',
                                    '<sup>',
                                    paste("Vigilance ;", n[2,2], "montants des APC manquants dans la sous-base"),'</sup>')))

Le graphique ci-dessus montre que c’est l’éditeur “Springer” qui cumule le plus d’APC sur la période 2013-2020 : ils représentent 21.99% de la somme des APC de tous les éditeurs sur cette même période.

En moyenne des APC

# Table du nombre d'articles par éditeur
t3 <- bso_filtre %>% group_by(publisher_dissemination) %>% summarise(mean_APC = mean(amount_apc_EUR)) %>% 
    mutate(pourcentage = round(mean_APC/sum(mean_APC, na.rm = TRUE)*100, 2)) %>% arrange(desc(mean_APC))

# Graphique
barplot <- t3[c(1:20),] %>% 
    mutate(publisher_dissemination = fct_reorder(publisher_dissemination, mean_APC)) %>%
    ggplot(aes(x = publisher_dissemination, y = mean_APC)) +
  geom_bar(stat="identity", fill = "#666666") +
  geom_text(aes(x = publisher_dissemination, y = mean_APC+0.09*max(mean_APC)), label = paste(t3[c(1:20),]$pourcentage, "%", sep = ""),
            colour = "black", fontface = "bold") +
  labs(
    x = "Éditeur",
    y = "APC moyen",
    title = "Les 20 éditeurs ayant en moyenne les APC les plus élevés"
  ) +
  coord_flip() +
  theme_minimal() +
  theme(plot.title = element_text(hjust=1))
ggplotly(barplot) %>% 
    layout(title = list(text = paste0('Les 20 éditeurs ayant en moyenne les APC les plus élevés',
                                    '<br>',
                                    '<sup>',
                                    paste("Vigilance ; ", n[2,2], "montants des APC manquants dans la sous-base"),'</sup>')))

Ce graphique montre que les écarts entre les montants moyens des APC pour chaque éditeur sont faibles. C’est l’éditeur “Department of Food Science, Bogor Agricultural Food Science” qui a les APC les plus élevés en moyenne (6318 euros), ils représentent 1.91% de la somme des moyennes des APC.

Les 20 plus gros éditeurs par année

En nombre d’articles

# Table du nombre d'articles par éditeur
t1_annee <- bso_filtre %>% group_by(publisher_dissemination, year) %>% summarise(Freq = n())
t1_annee <- t1_annee %>% group_by(year) %>% top_n(20, Freq)

# On remplace certains noms par des acronymes 
t1_annee$publisher_dissemination <- str_replace_all(t1_annee$publisher_dissemination, c("Ferrata Storti Foundation \\(Haematologica\\)" = "FSF",
                                                                                        "American Association for the Advancement of Science" = "AAAS",
                                                                                        "Association for Research in Vision and Ophthalmology \\(ARVO\\)" = "ARVO",
                                                                                        "International Union of Crystallograph" = "IUC"))

# Graphique
barplot1 <- t1_annee %>% 
    mutate(publisher_dissemination = fct_reorder(publisher_dissemination, Freq)) %>%
    ggplot(aes(x = publisher_dissemination, y = Freq)) +
  geom_bar(stat="identity", fill = "#112446") +
  coord_flip() + transition_time(year) +
  labs(
    x = "Éditeur",
    y = "Nombre d'articles",
    title = "Les 20 éditeurs ayant publié le plus d'articles",
    subtitle = "Année: {round(frame_time, 0)}"
  ) +
  theme_minimal()
barplot1 <- animate(barplot1)

# On sauvegarde et on affiche
anim_save("../figures/barplot1.gif", barplot1)
knitr::include_graphics("../figures/barplot1.gif")

Certains éditeurs ont été remplacés par des acronymes sur le graphique, par souci de lisibilité. Les correspondances sont les suivantes :

• AAAS : American Association for the Advancement of Science
• FSF : Ferrata Storti Foundation (Haematologica)
• ARVO : Association for Research in Vision and Ophthalmology (ARVO)
• IUC : International Union of Crystallograph

En somme des APC

# Table du nombre d'articles par éditeur
t2_annee <- bso_filtre %>% group_by(publisher_dissemination, year) %>% summarise(sum_APC = sum(amount_apc_EUR)) 
t2_annee <- t2_annee %>% group_by(year) %>% top_n(20, sum_APC)

# On remplace certains noms par des acronymes 
t2_annee$publisher_dissemination <- str_replace_all(t2_annee$publisher_dissemination, c("Ferrata Storti Foundation \\(Haematologica\\)" = "FSF",
                                                                                        "American Association for the Advancement of Science" = "AAAS",
                                                                                        "Association for Research in Vision and Ophthalmology \\(ARVO\\)" = "ARVO"))
# Graphique
barplot2 <- t2_annee %>% 
    mutate(publisher_dissemination = fct_reorder(publisher_dissemination, sum_APC)) %>%
    ggplot(aes(x = publisher_dissemination, y = sum_APC)) +
  geom_bar(stat="identity", fill = "#990000") +
  labs(
    x = "Éditeur",
    y = "Somme des APC",
    title = "Les 20 éditeurs ayant cumulé le plus d'APC",
    subtitle = "Année: {round(frame_time, 0)}"
  ) +
  coord_flip() + transition_time(year) +
  theme_minimal()
barplot2 <- animate(barplot2)

# On sauvegarde puis on affiche
anim_save("../figures/barplot2.gif", barplot2)
knitr::include_graphics("../figures/barplot2.gif")

Certains éditeurs ont été remplacés par des acronymes sur le graphique, par souci de lisibilité. Les correspondances sont les suivantes :

• AAAS : American Association for the Advancement of Science
• FSF : Ferrata Storti Foundation (Haematologica)
• ARVO : Association for Research in Vision and Ophthalmology (ARVO)

En moyenne des APC

knitr::include_graphics("../figures/barplot3.gif")

Certains éditeurs ont été remplacés par des acronymes sur le graphique, par souci de lisibilité. Les correspondances sont les suivantes :

• AAAS : American Association for the Advancement of Science
• FSF : Ferrata Storti Foundation (Haematologica)
• ARVO : Association for Research in Vision and Ophthalmology (ARVO)
• DFS - BAFS : Department of Food Science, Bogor Agricultural Food Science
• ASCO : American Society of Clinical Oncology (ASCO)
• EOCJC : Editorial Office of Chinese Journal of Cancer
• AMS : American Mathematical Society (AMS)
• ICFJ : International Cardiovascular Forum Journal
• ACA : American Crystallographic Association ACA

 

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Document sous licence ouverte