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Objectif : Exploration de données et création d’une sous-base pour l’analyse

Source des données : Baromètre de la Science Ouverte

Date début de l’analyse : 27 janvier 2022

Date de la dernière modification : 11 février 2022



I - Données brutes

# Packages nécessaires à l'analyse
packages = c("tidyverse", "data.table", "plotly", "kableExtra", "knitr", "DT", "icons", "gganimate", "animation")

## Installation des packages si besoin et chargement des librairies
package.check <- lapply(
  packages,
  FUN = function(x) {
    if (!require(x, character.only = TRUE)) {
      install.packages(x, dependencies = TRUE)
      library(x, character.only = TRUE)
    }
  }
)


# Import des données
    #https://data.enseignementsup-recherche.gouv.fr/explore/dataset/open-access-monitor-france/export/?disjunctive.oa_host_type&disjunctive.year
start_time <- Sys.time()
bso_data <- fread("https://storage.gra.cloud.ovh.net/v1/AUTH_32c5d10cb0fe4519b957064a111717e3/bso_dump/bso-publications-20220118.csv.gz", na.strings=c("","NA"))
end_time <- Sys.time()

# Configuration du temps d'exécution de la commande
import_time <- end_time - start_time
import_time <- paste(round(as.numeric(import_time, units.difftime(import_time)),2), units.difftime(import_time))

Temps d’exécution de l’import des données : 35.39 secs.

Dimensions du jeu de données brut : 1340197 observations et 27 variables.

Les 100 premières observations :

kable(bso_data[c(1:100),], format = "html") %>% 
  kable_styling(bootstrap_options = c("striped", "hover"), 
                full_width = T, 
                font_size = 9, 
                fixed_thead = TRUE,  #fix headers when scrolling 
                html_font = "sans-serif") %>% 
  scroll_box(width = "100%", height = "600px")
doi year title journal_issns journal_issn_l journal_name publisher publisher_dissemination hal_id pmid bso_classification bsso_classification domains lang genre amount_apc_EUR detected_countries bso_local_affiliations is_oa journal_is_in_doaj journal_is_oa observation_date oa_host_type oa_colors licence_publisher licence_repositories repositories
10.1159/000343525 2013 Non-invasive evaluation of bladder outlet obstruction in men suspected of benign prostatic hyperplasia: usefulness of the d index. 1661-7649 1661-7649 Current Urology Ovid Technologies (Wolters Kluwer Health) Wolters Kluwer Health NA 24917729 Medical research Clinical Sciences health en journal-article 0.0000 fr;us NA TRUE FALSE FALSE 2021Q4 publisher;repository green;other no license other PubMed Central
10.3390/jcm2040201 2013 Mesenchymal Stromal Cells: Updates and Therapeutic Outlook in Rheumatic Diseases. 2077-0383 2077-0383 Journal of Clinical Medicine MDPI AG MDPI NA 26237144 Medical research Clinical Sciences health en journal-article 1588.4842 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by CiteSeerX;PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.5936/csbj.201303018 2013 The role of Lipoxin A4 in Cystic Fibrosis Lung Disease. 2001-0370 2001-0370 Computational and Structural Biotechnology Journal Elsevier BV Elsevier NA 24688726 Biology (fond.) Engineering;Other Medical and Health Sciences health en journal-article 1790.1709 ie;fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central;pdfs.semanticscholar.org
10.1155/2013/317215 2013 A tool to investigate symmetry properties of newborns brain: the newborns’ symmetric brain atlas. 2314-4661 2314-4661 ISRN Neuroscience Hindawi Limited Hindawi NA 24967308 Medical research Psychology and Cognitive Sciences health en journal-article NA fr NA TRUE FALSE TRUE 2021Q4 publisher;repository green;other cc-by cc-by PubMed Central;pdfs.semanticscholar.org
10.3897/bdj.1.e995 2013 Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal. 1314-2828,1314-2836 1314-2828 Biodiversity Data Journal Pensoft Publishers Pensoft Publishers NA 24723782 Biology (fond.) Other Biological Sciences health en journal-article 397.7387 us;de;cz;ch;gb;bg;nl;fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central;Zenodo;bdj.pensoft.net;nhm.openrepository.com;pdfs.semanticscholar.org;repository.naturalis.nl
10.3390/life3020295 2013 Magnetotactic bacteria from extreme environments. 2075-1729 2075-1729 Life MDPI AG MDPI NA 25369742 Biology (fond.) Microbiology health en journal-article 948.1522 us;fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by CiteSeerX;PubMed Central;digitalscholarship.unlv.edu;mdpi.com
10.3390/biology2031110 2013 The Role of Helicobacter pylori Outer Membrane Proteins in Adherence and Pathogenesis. 2079-7737 2079-7737 Biology MDPI AG MDPI NA 24833057 Biology (fond.) Microbiology health en journal-article 1109.3825 pt;fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by CiteSeerX;PubMed Central;pdfs.semanticscholar.org;repositorio.insa.pt
10.3390/brainsci3041461 2013 White matter loss in a mouse model of periventricular leukomalacia is rescued by trophic factors. 2076-3425 2076-3425 Brain Sciences MDPI AG MDPI NA 24961618 Medical research Neurosciences health en journal-article 1091.2094 mx;us;fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by California Digital Library - eScholarship;PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.1016/j.rinim.2013.05.004 2013 Perturbations of the CD8(+) T-cell repertoire in CVID patients with complications. 2211-2839 2211-2839 Results in Immunology Elsevier BV Elsevier NA 24600567 Biology (fond.) Microbiology health en journal-article 2384.8283 fr NA TRUE FALSE FALSE 2021Q4 publisher;repository green;hybrid cc-by-nc-nd no license PubMed Central
10.1007/s00445-013-0762-x 2013 Dune bedforms produced by dilute pyroclastic density currents from the August 2006 eruption of Tungurahua volcano, Ecuador. 0258-8900,1432-0819 0258-8900 Bulletin of Volcanology Springer Science and Business Media LLC Springer NA 26069385 Earth, Ecology, Energy and applied biology Clinical Sciences;Public Health and Health Services health en journal-article 1477.7676 de;ec;fr NA TRUE FALSE FALSE 2021Q4 publisher;repository green;hybrid cc-by cc-by PubMed Central;boris.unibe.ch
10.1021/nl303898y 2013 Modulating physical properties of isolated and self-assembled nanocrystals through change in nanocrystallinity. 1530-6984,1530-6992 1530-6984 Nano Letters American Chemical Society (ACS) American Chemical Society NA 23272764 Physical sciences, Astronomy Multidisciplinary health en journal-article NA fr NA FALSE FALSE FALSE 2021Q4 closed closed NA NA NA
10.3390/metabo3010024 2013 Absolute Configuration of the New 3-epi-cladocroic Acid from the Mediterranean Sponge Haliclona fulva. 2218-1989 2218-1989 Metabolites MDPI AG MDPI NA 24957888 Biology (fond.) Biochemistry and Cell Biology;Chemical Sciences;Clinical Sciences health en journal-article 1106.0228 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central;pdfs.semanticscholar.org
10.3390/biology2010317 2013 The dynamic arctic snow pack: an unexplored environment for microbial diversity and activity. 2079-7737 2079-7737 Biology MDPI AG MDPI NA 24832663 Biology (fond.) Microbiology health en journal-article 1109.3825 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by CiteSeerX;PubMed Central;pdfs.semanticscholar.org
10.1140/epjc/s10052-013-2617-1 2013 Charmonium and e+e- pair photoproduction at mid-rapidity in ultra-peripheral Pb-Pb collisions at [Formula: see text]. 1434-6044,1434-6052 1434-6044 The European Physical Journal C Springer Science and Business Media LLC Springer NA 25814847 Physical sciences, Astronomy Physical Sciences health en journal-article 0.0000 us;br;hr;nl;mx;ro;gb;fr;th;no;se;am;ch;cu;pe;za;pl;hu;es;de;cn;pk;ua;dk;gr;it;fi;jp;cz;sk;in 775685019 TRUE FALSE FALSE 2021Q4 publisher;repository green;other cc-by cc-by PubMed Central;US Office of Scientific and Technical Information;arXiv;bora.uib.no;cds.cern.ch;iris.unito.it;ricerca.uniba.it;vinar.vin.bg.ac.rs;www.duo.uio.no
10.1140/epjc/s10052-013-2674-5 2013 Jet and underlying event properties as a function of charged-particle multiplicity in proton-proton collisions at [Formula: see text]. 1434-6044,1434-6052 1434-6044 The European Physical Journal C Springer Science and Business Media LLC Springer NA 25814851 Physical sciences, Astronomy Physical Sciences health en journal-article 0.0000 at;ru;tr;br;us;hr;co;mx;ee;fr;ge;th;gb;am;pt;ch;hu;pl;es;cn;de;pk;ua;by;gr;nz;it;cy;lt;fi;ie;cz;be;bg;eg;tw;rs;in 775685019 TRUE FALSE FALSE 2021Q4 publisher;repository green;other cc-by cc-by DIGITAL.CSIC (Spain);PubMed Central;US Office of Scientific and Technical Information;arXiv;archive.ugent.be;authors.library.caltech.edu;bib-pubdb1.desy.de;bura.brunel.ac.uk;cds.cern.ch;digibuo.uniovi.es;dipot.ulb.ac.be;dora;dspace.mit.edu;eresearch.ozyegin.edu.tr;iris.unibs.it;iris.unito.it;oaktrust.library.tamu.edu;repositorio.unesp.br;scholarship.rice.edu;vinar.vin.bg.ac.rs;www.zora.uzh.ch
10.1155/2013/746845 2013 Death Receptors in the Selective Degeneration of Motoneurons in Amyotrophic Lateral Sclerosis. 2090-858X,2090-8601 2090-8601 Journal of Neurodegenerative Diseases Hindawi Limited Hindawi NA 26316997 Medical research Clinical Sciences health en journal-article NA ch;fr NA TRUE FALSE TRUE 2021Q4 publisher;repository green;other cc-by cc-by PubMed Central;pdfs.semanticscholar.org
10.1140/epjc/s10052-013-2306-0 2013 Jet energy resolution in proton-proton collisions at [Formula: see text] recorded in 2010 with the ATLAS detector. 1434-6044,1434-6052 1434-6044 The European Physical Journal C Springer Science and Business Media LLC Springer NA 25814854 Physical sciences, Astronomy Physical Sciences health en journal-article 0.0000 at;us;tr;br;co;nl;ro;gb;se;ca;fr;no;ge;am;pt;ch;za;pl;si;es;de;cn;dk;cl;by;gr;it;au;ar;il;az;jp;cz;ma;sk;tw;rs 775685019 TRUE FALSE FALSE 2021Q4 publisher;repository green;other cc-by cc-by PubMed Central;US Office of Scientific and Technical Information;arXiv;authors.library.caltech.edu;bib-pubdb1.desy.de;cds.cern.ch;comum.rcaap.pt;dare.uva.nl;digital.library.adelaide.edu.au;dnet;dspace.calstate.edu;dspace.mit.edu;eprints.gla.ac.uk;eprints.lancs.ac.uk;https;openaccess.dogus.edu.tr;pure.ed.ac.uk;repositorium.sdum.uminho.pt;repository.ubn.ru.nl;ri.conicet.gov.ar;ruj.uj.edu.pl;sedici.unlp.edu.ar;vinar.vin.bg.ac.rs;wrap.warwick.ac.uk
10.3402/jmahp.v1i0.21131 2013 Drug reformulations and repositioning in pharmaceutical industry and its impact on market access: reassessment of nomenclature. 2001-6689 2001-6689 Journal of Market Access & Health Policy Informa UK Limited Informa NA 27226826 Medical research Public Health and Health Services health en journal-article 1999.4583 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by-nc cc-by PubMed Central
10.4161/rdis.27228 2013 Natural breaking of the maternal silence at the mouse and human imprinted Prader-Willi locus: A whisper with functional consequences. 2167-5511 2167-5511 Rare Diseases Informa UK Limited Informa NA 25003016 Biology (fond.) Other Medical and Health Sciences health en journal-article 1999.4583 fr NA TRUE FALSE FALSE 2021Q4 publisher;repository green;hybrid no license cc-by-nc PubMed Central
10.3389/fchem.2013.00010 2013 Electrogenerated poly(pyrrole-lactosyl) and poly(pyrrole-3’-sialyllactosyl) interfaces: toward the impedimetric detection of lectins. 2296-2646 2296-2646 Frontiers in Chemistry Frontiers Media SA Frontiers NA 24790939 Chemistry Chemical Sciences health en journal-article 1768.5848 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central
10.3390/antiox2020037 2013 Comparative Study of Antioxidant Power, Polyphenols, Flavonoids and Betacyanins of the Peel and Pulp of Three Tunisian Opuntia Forms. 2076-3921 2076-3921 Antioxidants MDPI AG MDPI NA 26787622 Biology (fond.) Engineering health en journal-article 991.0297 tn;fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.1007/s13546-014-0872-2 2013 [Veno-venous extracorporeal support to treat acute respiratory distress syndrome: Rationale and clinical objectives]. 1624-0693,1951-6959 1624-0693 Réanimation Lavoisier Lavoisier NA 32288734 Medical research Clinical Sciences health fr journal-article NA ca;fr NA TRUE FALSE FALSE 2021Q4 repository green NA other PubMed Central
10.3390/plants2020230 2013 Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection. 2223-7747 2223-7747 Plants MDPI AG MDPI hal-02379666 27137374 Biology (fond.) Engineering health en journal-article 1111.9713 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by HAL;PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.1140/epjc/s10052-013-2494-7 2013 Measurement of masses in the [Formula: see text] system by kinematic endpoints in pp collisions at [Formula: see text]. 1434-6044,1434-6052 1434-6044 The European Physical Journal C Springer Science and Business Media LLC Springer NA 25814866 Physical sciences, Astronomy Physical Sciences health en journal-article 0.0000 at;ru;tr;br;us;hr;co;mx;ee;fr;ge;th;gb;am;pt;ch;hu;pl;es;cn;de;pk;ua;by;gr;nz;it;cy;lt;fi;ie;cz;be;bg;eg;tw;rs;in 775685019 TRUE FALSE FALSE 2021Q4 publisher;repository green;other cc-by cc-by PubMed Central;US Office of Scientific and Technical Information;americanae.aecid.es;arXiv;archive.ugent.be;authors.library.caltech.edu;bib-pubdb1.desy.de;bura.brunel.ac.uk;cds.cern.ch;digibuo.uniovi.es;dipot.ulb.ac.be;dora;eresearch.ozyegin.edu.tr;iris.unibs.it;irua;oaktrust.library.tamu.edu;scholarship.rice.edu;vinar.vin.bg.ac.rs;www.zora.uzh.ch
10.1590/s1980-57642013dn70100004 2013 Neuropathology of frontotemporal lobar degeneration: a review. 1980-5764 1980-5764 Dementia & Neuropsychologia FapUNIFESP (SciELO) FapUNIFESP (SciELO) NA 29213815 Medical research Psychology and Cognitive Sciences health en journal-article 0.0000 fr;br NA TRUE TRUE TRUE 2021Q4 publisher;repository green;diamond cc-by cc-by PubMed Central;pdfs.semanticscholar.org;scielo
10.1155/2013/748241 2013 Caseous necrosis of mitral annulus: a rare cause of stroke. 2090-6404,2090-6412 2090-6404 Case Reports in Cardiology Hindawi Limited Hindawi NA 24829807 Medical research Cardiorespiratory Medicine and Haematology health en journal-article 491.3819 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central;pdfs.semanticscholar.org
10.1155/2013/648791 2013 Investigating Recent Testing among MSM: Results from Community-Based HIV Rapid Testing Attendees in France. 2090-7893,2090-7958 2090-7958 Journal of Sexually Transmitted Diseases Hindawi Limited Hindawi NA 26316962 Medical research Public Health and Health Services health en journal-article NA fr NA TRUE FALSE TRUE 2021Q4 publisher;repository green;other cc-by cc-by PubMed Central;pdfs.semanticscholar.org
10.11646/zootaxa.3745.2.4 2013 Description of Culicoides paradoxalis sp. nov. from France and Portugal (Diptera: Ceratopogonidae). 1175-5334,1175-5326 1175-5326 Zootaxa Magnolia Press Magnolia Press NA 25113346 Biology (fond.) Other Biological Sciences health en journal-article NA cz;pt;fr;gb NA FALSE FALSE FALSE 2021Q4 closed closed NA NA NA
10.1093/conphys/cot007 2013 Elevated corticosterone levels decrease reproductive output of chick-rearing Adélie penguins but do not affect chick mass at fledging. 2051-1434 2051-1434 Conservation Physiology Oxford University Press (OUP) Oxford University Press NA 27293591 Biology (fond.) Agricultural and Veterinary Sciences health en journal-article 1594.0591 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central;pdfs.semanticscholar.org
10.1186/2193-1801-2-651 2013 Prevalence of cardio-respiratory factors in the occurrence of the decrease in oxygen uptake during supra-maximal, constant-power exercise. 2193-1801 2193-1801 SpringerPlus Springer Science and Business Media LLC Springer NA 25379364 Medical research Other Medical and Health Sciences health en journal-article 886.2092 fr;au NA TRUE FALSE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central
10.1016/s1877-1203(13)70348-3 2013 1877-1203 1877-1203 Revue des Maladies Respiratoires Actualités Elsevier BV Elsevier NA 32362957 Medical research NA health fr journal-article NA fr NA TRUE FALSE FALSE 2021Q4 repository green NA other PubMed Central
10.1111/j.1600-0587.2012.07773.x 2012 Building megaphylogenies for macroecology: taking up the challenge. 0906-7590 0906-7590 Ecography Wiley Wiley NA 24790290 Biology (fond.) Other Biological Sciences health en journal-article NA fr NA TRUE FALSE FALSE 2021Q4 repository green NA no license PubMed Central
10.1159/000342915 2012 Relative impact of iodine supplementation and maternal smoking on cord blood thyroglobulin in pregnant women with normal thyroid function. 2235-0802,2235-0640 2235-0640 European Thyroid Journal S. Karger AG S. Karger AG NA 24783029 Medical research Clinical Sciences health en journal-article 1853.7521 fr NA TRUE FALSE FALSE 2021Q4 publisher;repository green;hybrid no license other PubMed Central
10.1186/2050-5736-1-13 2013 The road to clinical use of high-intensity focused ultrasound for liver cancer: technical and clinical consensus. 2050-5736 2050-5736 Journal of Therapeutic Ultrasound Springer Science and Business Media LLC Springer inserm-00851863 25512859 Medical research Clinical Sciences health en journal-article 1477.7676 il;us;cn;ch;fr;nl;gb;it NA TRUE FALSE FALSE 2021Q4 publisher;repository green;hybrid cc-by cc-by HAL;PubMed Central;unige.ch
10.1074/mcp.m112.020727 2013 Identification of the hypoxia-inducible factor 2α nuclear interactome in melanoma cells reveals master proteins involved in melanoma development. 1535-9476 1535-9476 Molecular & Cellular Proteomics Elsevier BV Elsevier NA 23275444 Biology (fond.) Biochemistry and Cell Biology health en journal-article 1827.0809 fr NA TRUE FALSE FALSE 2021Q4 publisher;repository green;hybrid cc-by no license PubMed Central
10.3390/jpm3030177 2013 Effect model law: an approach for the implementation of personalized medicine. 2075-4426 2075-4426 Journal of Personalized Medicine MDPI AG MDPI NA 25562651 Medical research Clinical Sciences health en journal-article 1200.5771 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central;pdfs.semanticscholar.org
10.3390/metabo3020484 2013 Metabolite Identification through Machine Learning- Tackling CASMI Challenge Using FingerID. 2218-1989 2218-1989 Metabolites MDPI AG MDPI NA 24958002 Biology (fond.) Chemical Sciences health en journal-article 1106.0228 fi;ch;fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central;aaltodoc.aalto.fi;pdfs.semanticscholar.org
10.3402/jmahp.v1i0.20892 2013 New drug regulations in France: what are the impacts on market access? Part 2 - impacts on market access and impacts for the pharmaceutical industry. 2001-6689 2001-6689 Journal of Market Access & Health Policy Informa UK Limited Informa NA 27226829 Medical research Pharmacology and Pharmaceutical Sciences health en journal-article 1999.4583 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by-nc cc-by PubMed Central
10.12942/lrr-2013-3 2013 The Spin-Foam Approach to Quantum Gravity. 2367-3613,1433-8351 2367-3613 Living Reviews in Relativity Springer Science and Business Media LLC Springer NA 28179842 Physical sciences, Astronomy Physical Sciences health en journal-article 0.0000 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;diamond cc-by other CiteSeerX;PubMed Central;arXiv
10.1186/2051-4190-23-1 2013 Andrologie becomes Basic and Clinical Andrology. 2051-4190 2051-4190 Basic and Clinical Andrology Springer Science and Business Media LLC Springer NA 25780565 Medical research Clinical Sciences health en journal-article 1477.7676 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central
10.3390/metabo3030820 2013 Physiological and Molecular Timing of the Glucose to Acetate Transition in Escherichia coli. 2218-1989 2218-1989 Metabolites MDPI AG MDPI hal-02146740 24958151 Biology (fond.) Agricultural and Veterinary Sciences;Chemical Sciences health en journal-article 1106.0228 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by HAL;PubMed Central;pdfs.semanticscholar.org
10.3390/microarrays2010001 2013 Testing a Microarray to Detect and Monitor Toxic Microalgae in Arcachon Bay in France. 2076-3905 2076-3905 Microarrays MDPI AG MDPI NA 27605178 Biology (fond.) NA health en journal-article 1040.6789 gb;fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by Archimer;PubMed Central;pdfs.semanticscholar.org
10.1186/2050-5736-1-24 2014 Trans-cranial focused ultrasound without hair shaving: feasibility study in an ex vivo cadaver model. 2050-5736 2050-5736 Journal of Therapeutic Ultrasound Springer Science and Business Media LLC Springer inserm-00923402 25512865 Medical research Clinical Sciences health en journal-article 1728.4550 us;fr NA TRUE FALSE FALSE 2021Q4 publisher;repository green;hybrid cc-by cc-by HAL;PubMed Central
10.1159/000346174 2012 2012 European thyroid association guidelines for genetic testing and its clinical consequences in medullary thyroid cancer. 2235-0802,2235-0640 2235-0640 European Thyroid Journal S. Karger AG S. Karger AG NA 24783025 Medical research Clinical Sciences health en journal-article 1853.7521 pt;de;gb;gr;fr;it NA TRUE FALSE FALSE 2021Q4 publisher;repository green;hybrid no license no license PubMed Central
10.4137/geg.s12144 2013 Epigenetics of autoantigens: new opportunities for therapy of autoimmune diseases. 1179-237X,1179-237X 1179-237X Genetics & Epigenetics SAGE Publications SAGE Publications NA 25512708 Medical research Clinical Sciences health en journal-article 1133.9583 us;fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by-nc other PubMed Central
10.1155/2013/323614 2013 Variant of X-Linked Chronic Granulomatous Disease Revealed by a Severe Burkholderia cepacia Invasive Infection in an Infant. 2090-6609,2090-6617 2090-6617 Case Reports in Immunology Hindawi Limited Hindawi NA 25374740 Medical research Other Medical and Health Sciences health en journal-article 491.3819 fr;br NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central;pdfs.semanticscholar.org
10.1186/2051-4190-23-8 2013 The immunobiology of the mammalian epididymis: the black box is now open! 2051-4190 2051-4190 Basic and Clinical Andrology Springer Science and Business Media LLC Springer NA 25780570 Biology (fond.) Clinical Sciences health en journal-article 1477.7676 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central
10.1016/j.exmath.2013.01.004 2013 Formal Laurent series in several variables. 0723-0869 0723-0869 Expositiones Mathematicae Elsevier BV Elsevier NA 26478652 Mathematics Physical Sciences health en journal-article 2676.2600 at;fr NA TRUE FALSE FALSE 2021Q4 publisher;repository green;hybrid cc-by-nc-nd other CiteSeerX;PubMed Central
10.3390/plants2010107 2013 Cell Wall Composition, Biosynthesis and Remodeling during Pollen Tube Growth. 2223-7747 2223-7747 Plants MDPI AG MDPI hal-01805132 27137369 Biology (fond.) Biochemistry and Cell Biology health en journal-article 1111.9713 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by HAL;PubMed Central;pdfs.semanticscholar.org
10.1140/epjc/s10052-013-2328-7 2013 Measurement of the [Formula: see text] production cross section in the tau + jets channel using the ATLAS detector. 1434-6044,1434-6052 1434-6044 The European Physical Journal C Springer Science and Business Media LLC Springer NA 25814855 Physical sciences, Astronomy Physical Sciences health en journal-article 0.0000 at;us;tr;br;co;nl;ro;gb;se;ca;fr;no;ge;am;pt;ch;za;pl;si;es;de;cn;dk;cl;by;gr;it;au;ar;il;az;jp;cz;ma;sk;tw;rs 775685019 TRUE FALSE FALSE 2021Q4 publisher;repository green;other cc-by cc-by DiVA.org;PubMed Central;US Office of Scientific and Technical Information;arXiv;authors.library.caltech.edu;bib-pubdb1.desy.de;cds.cern.ch;dare.uva.nl;digital.library.adelaide.edu.au;dnet;dspace.calstate.edu;eprints.gla.ac.uk;eprints.lancs.ac.uk;https;openaccess.dogus.edu.tr;repositorium.sdum.uminho.pt;repository.ubn.ru.nl;ri.conicet.gov.ar;ruj.uj.edu.pl;sedici.unlp.edu.ar;vinar.vin.bg.ac.rs;wrap.warwick.ac.uk
10.3897/bdj.1.e1013 2013 Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data. 1314-2828,1314-2836 1314-2828 Biodiversity Data Journal Pensoft Publishers Pensoft Publishers NA 24723752 Biology (fond.) Other Biological Sciences health en journal-article 397.7387 cn;hr;de;dk;gb;be;bg;gr;fr;it NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central;Pure (Denmark);Zenodo
10.1007/s00706-013-1030-7 2013 Electronic and solvent effects on kinetics of SNAr substitution reactions of substituted anilines with 2,6-bis(trifluoromethanesulfonyl)-4-nitroanisole in MeOH-Me2SO mixtures of varying composition: one reaction with two mechanistic pathways. 0026-9247,1434-4475 0026-9247 Monatshefte für Chemie - Chemical Monthly Springer Science and Business Media LLC Springer NA 26166874 Chemistry Chemical Sciences health en journal-article 2368.5678 sa;tn;fr NA TRUE FALSE FALSE 2021Q4 publisher;repository green;hybrid cc-by other PubMed Central
10.1155/2013/434965 2013 The rendu-osler-weber disease revealed by a refractory hypoxemia and severe cerebral fat embolism. 2090-6420,2090-6439 2090-6420 Case Reports in Critical Care Hindawi Limited Hindawi NA 24860682 Medical research Clinical Sciences health en journal-article 491.3819 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central;pdfs.semanticscholar.org
10.4137/jcd.s11034 2013 Crosstalk between apoptosis and autophagy: molecular mechanisms and therapeutic strategies in cancer. 1179-0660,1179-0660 1179-0660 Journal of Cell Death SAGE Publications SAGE Publications NA 25278778 Medical research Biochemistry and Cell Biology;Oncology and Carcinogenesis health en journal-article NA us;fr NA TRUE FALSE FALSE 2021Q4 publisher;repository green;other cc-by-nc other PubMed Central;pdfs.semanticscholar.org
10.1140/epjc/s10052-013-2493-8 2013 Search for physics beyond the standard model in events with τ leptons, jets, and large transverse momentum imbalance in pp collisions at [Formula: see text]. 1434-6044,1434-6052 1434-6044 The European Physical Journal C Springer Science and Business Media LLC Springer NA 25814865 Physical sciences, Astronomy Physical Sciences health en journal-article 0.0000 at;ru;tr;br;us;hr;co;mx;ee;fr;ge;th;gb;am;pt;ch;hu;pl;es;cn;de;pk;ua;by;gr;nz;it;cy;lt;fi;cz;be;bg;eg;tw;rs;in 775685019 TRUE FALSE FALSE 2021Q4 publisher;repository green;other cc-by cc-by DIGITAL.CSIC (Spain);PubMed Central;americanae.aecid.es;arXiv;archive.ugent.be;authors.library.caltech.edu;bib-pubdb1.desy.de;bura.brunel.ac.uk;cds.cern.ch;dipot.ulb.ac.be;dora;dspace.mit.edu;eresearch.ozyegin.edu.tr;iris.unibs.it;irua;oaktrust.library.tamu.edu;scholarship.rice.edu;vinar.vin.bg.ac.rs;www.zora.uzh.ch
10.3390/diagnostics3010033 2013 A Review of Heating and Temperature Control in Microfluidic Systems: Techniques and Applications. 2075-4418 2075-4418 Diagnostics MDPI AG MDPI hal-02172355 26835667 Medical research Chemical Sciences;Engineering health en journal-article 1103.3353 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by HAL;PubMed Central;mdpi.com
10.1007/s13546-014-0876-y 2013 [Particularities of ECMO in acute respiratory distress syndrome in pediatrics]. 1624-0693,1951-6959 1624-0693 Réanimation Lavoisier Lavoisier NA 32288736 Medical research Paediatrics and Reproductive Medicine health fr journal-article NA fr NA TRUE FALSE FALSE 2021Q4 repository green NA other PubMed Central
10.1186/2051-4190-23-3 2013 The nature of human sperm head vacuoles: a systematic literature review. 2051-4190 2051-4190 Basic and Clinical Andrology Springer Science and Business Media LLC Springer NA 25780567 Medical research Clinical Sciences health en journal-article 1477.7676 fr 197819444 TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central
10.3732/apps.1200179 2013 Annotation and re-sequencing of genes from de novo transcriptome assembly of Abies alba (Pinaceae). 2168-0450 2168-0450 Applications in Plant Sciences Wiley Wiley hal-02643985 25202477 Biology (fond.) Agricultural and Veterinary Sciences health en journal-article 534.7182 de;fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by-nc-nd other HAL;PubMed Central;bioone.org
10.1590/s1980-57642013dn70100011 2013 Frontal presentation of Alzheimer’s disease: a series of patients with biological evidence by CSF biomarkers. 1980-5764 1980-5764 Dementia & Neuropsychologia FapUNIFESP (SciELO) FapUNIFESP (SciELO) NA 29213822 Medical research Neurosciences health en journal-article 0.0000 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;diamond cc-by cc-by PubMed Central;pdfs.semanticscholar.org
10.1155/2013/796174 2013 The effect of performing a dual task on postural control in children with autism. 2314-4661 2314-4661 ISRN Neuroscience Hindawi Limited Hindawi NA 24959567 Medical research Neurosciences health en journal-article NA fr NA TRUE FALSE TRUE 2021Q4 publisher;repository green;other cc-by cc-by PubMed Central;pdfs.semanticscholar.org
10.1140/epjc/s10052-013-2362-5 2013 Multi-channel search for squarks and gluinos in [Formula: see text]pp collisions with the ATLAS detector at the LHC. 1434-6044,1434-6052 1434-6044 The European Physical Journal C Springer Science and Business Media LLC Springer NA 25814856 Physical sciences, Astronomy Physical Sciences health en journal-article 0.0000 at;us;tr;br;co;nl;ro;gb;se;ca;fr;no;ge;am;pt;ch;za;pl;si;es;de;cn;dk;cl;by;gr;it;au;ar;il;az;jp;cz;ma;sk;tw;rs 775685019 TRUE FALSE FALSE 2021Q4 publisher;repository green;other cc-by cc-by DiVA.org;PubMed Central;US Office of Scientific and Technical Information;arXiv;authors.library.caltech.edu;bib-pubdb1.desy.de;cds.cern.ch;dare.uva.nl;digital.library.adelaide.edu.au;dspace.calstate.edu;dspace.mit.edu;eprints.gla.ac.uk;eprints.lancs.ac.uk;https;openaccess.dogus.edu.tr;pure.ed.ac.uk;repositorium.sdum.uminho.pt;repository.ubn.ru.nl;roderic.uv.es;ruj.uj.edu.pl;sedici.unlp.edu.ar;vinar.vin.bg.ac.rs;wrap.warwick.ac.uk
10.4161/rdis.24247 2013 A step closer toward therapies for p63-related disorders. 2167-5511 2167-5511 Rare Diseases Informa UK Limited Informa NA 25002990 Medical research Other Medical and Health Sciences health en journal-article 1999.4583 fr;nl NA TRUE FALSE FALSE 2021Q4 publisher;repository green;hybrid no license cc-by-nc PubMed Central
10.1117/12.2006255 2013 Characterizing healthy and osteoarthritic knee cartilage on phase contrast CT with geometric texture features. NA NA Medical Imaging 2013: Biomedical Applications in Molecular, Structural, and Functional Imaging SPIE SPIE Society of Photo-Optical Instrumentation Engineers NA 29200588 Medical research Engineering health en proceedings NA de;us;fr NA TRUE FALSE FALSE 2021Q4 repository green NA no license PubMed Central
10.1140/epjc/s10052-013-2283-3 2013 Measurement of the sum of WW and WZ production with W+dijet events in pp collisions at [Formula: see text]. 1434-6044,1434-6052 1434-6044 The European Physical Journal C Springer Science and Business Media LLC Springer NA 25814853 Physical sciences, Astronomy Physical Sciences health en journal-article 0.0000 at;ru;tr;br;us;hr;co;mx;ee;fr;ge;th;gb;am;pt;ch;hu;pl;es;cn;de;pk;ua;by;gr;nz;it;cy;lt;fi;cz;be;bg;eg;tw;rs;in 775685019 TRUE FALSE FALSE 2021Q4 publisher;repository green;other cc-by cc-by DIGITAL.CSIC (Spain);PubMed Central;acervodigital.unesp.br;arXiv;archive.ugent.be;authors.library.caltech.edu;bura.brunel.ac.uk;cds.cern.ch;digibuo.uniovi.es;dipot.ulb.ac.be;dora;dspace.mit.edu;iris.unito.it;irua;scholarship.rice.edu;vinar.vin.bg.ac.rs
10.1007/s10967-013-2525-8 2013 Innovative concept for a major breakthrough in atmospheric radioactive xenon detection for nuclear explosion monitoring. 0236-5731,1588-2780 0236-5731 Journal of Radioanalytical and Nuclear Chemistry Springer Science and Business Media LLC Springer NA 26224943 Chemistry Physical Sciences health en journal-article 1477.7676 be;fr 775685019 TRUE FALSE FALSE 2021Q4 publisher;repository green;hybrid cc-by other PubMed Central
10.3390/antibiotics2020288 2013 Multiple Pathways of Genome Plasticity Leading to Development of Antibiotic Resistance. 2079-6382 2079-6382 Antibiotics MDPI AG MDPI pasteur-01691592 27029305 Medical research Microbiology health en journal-article 1158.3500 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by CiteSeerX;HAL;PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.3390/life3040524 2013 Distance and Size Perception in Astronauts during Long-Duration Spaceflight. 2075-1729 2075-1729 Life MDPI AG MDPI NA 25369884 Biology (fond.) Neurosciences;Psychology and Cognitive Sciences health en journal-article 948.1522 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central;pdfs.semanticscholar.org
10.1186/2049-9256-1-9 2013 The amygdala between sensation and affect: a role in pain. 2049-9256 2049-9256 Journal of Molecular Psychiatry Springer Science and Business Media LLC Springer NA 25408902 Medical research Psychology and Cognitive Sciences health en journal-article 1477.7676 fr NA TRUE FALSE FALSE 2021Q4 publisher;repository green;hybrid cc-by cc-by PubMed Central;univOAK
10.3389/fchem.2013.00043 2014 The hygroscopic behavior of plant fibers: a review. 2296-2646 2296-2646 Frontiers in Chemistry Frontiers Media SA Frontiers hal-01007368 24790971 Chemistry Chemical Sciences health en journal-article 1768.5848 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by HAL;PubMed Central
10.1186/2051-4190-23-9 2013 RNA: a possible contributor to the ‘missing heritability’. 2051-4190 2051-4190 Basic and Clinical Andrology Springer Science and Business Media LLC Springer inserm-00904366 25780571 Medical research Clinical Sciences health en journal-article 1477.7676 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by HAL;PubMed Central
10.3390/diagnostics3020271 2013 Quantification of Right and Left Ventricular Function in Cardiac MR Imaging: Comparison of Semiautomatic and Manual Segmentation Algorithms. 2075-4418 2075-4418 Diagnostics MDPI AG MDPI NA 26835680 Medical research Clinical Sciences health en journal-article 1103.3353 es;fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by CiteSeerX;PubMed Central;mdpi.com;minerva.usc.es;pdfs.semanticscholar.org
10.1097/qai.0b013e318282537f 2013 Direct quantification of cell-associated HIV DNA in isolated rectal and blood memory CD4 T cells revealed their similar and low infection levels in long-term treated HIV-infected patients. 1525-4135 1525-4135 JAIDS Journal of Acquired Immune Deficiency Syndromes Ovid Technologies (Wolters Kluwer Health) Wolters Kluwer Health NA 23274932 Medical research Public Health and Health Services health en journal-article NA fr NA FALSE FALSE FALSE 2021Q4 closed closed NA NA NA
10.3390/pathogens2010071 2013 Immune evasion, immunopathology and the regulation of the immune system. 2076-0817 2076-0817 Pathogens MDPI AG MDPI hal-01118543 25436882 Medical research Other Medical and Health Sciences health en journal-article 1074.8644 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by HAL;PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.5936/csbj.201303008 2013 A network-based approach for predicting Hsp27 knock-out targets in mouse skeletal muscles. 2001-0370 2001-0370 Computational and Structural Biotechnology Journal Elsevier BV Elsevier hal-01189801 24688716 Biology (fond.) Engineering;Other Medical and Health Sciences health en journal-article 1790.1709 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by HAL;PubMed Central;pdfs.semanticscholar.org
10.1016/j.rinim.2013.04.001 2013 Sequence analysis of a normalized cDNA library of Mytilus edulis hemocytes exposed to Vibrio splendidus LGP32 strain. 2211-2839 2211-2839 Results in Immunology Elsevier BV Elsevier NA 24600557 Biology (fond.) Agricultural and Veterinary Sciences health en journal-article 2384.8283 ca;fr NA TRUE FALSE FALSE 2021Q4 publisher;repository green;hybrid cc-by-nc-nd no license PubMed Central
10.3390/vaccines1030293 2013 A Multidisciplinary Research Agenda for Understanding Vaccine-Related Decisions. 2076-393X 2076-393X Vaccines MDPI AG MDPI NA 26344114 Medical research Agricultural and Veterinary Sciences health en journal-article 1395.6300 fr;gb;au NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by CiteSeerX;PubMed Central;mdpi.com;pdfs.semanticscholar.org;researchonline.lshtm.ac.uk;ses.library.usyd.edu.au
10.1140/epjc/s10052-013-2518-3 2013 Improved luminosity determination in pp collisions at [Formula: see text] using the ATLAS detector at the LHC. 1434-6044,1434-6052 1434-6044 The European Physical Journal C Springer Science and Business Media LLC Springer NA 25814867 Physical sciences, Astronomy Physical Sciences health en journal-article 0.0000 at;us;tr;br;co;nl;ro;gb;se;ca;fr;no;ge;am;pt;ch;za;pl;si;es;de;cn;dk;cl;by;gr;it;au;ar;il;az;jp;cz;ma;sk;tw;rs 775685019 TRUE FALSE FALSE 2021Q4 publisher;repository green;other cc-by cc-by DiVA.org;PubMed Central;US Office of Scientific and Technical Information;arXiv;authors.library.caltech.edu;cds.cern.ch;dare.uva.nl;digibug.ugr.es;digital.library.adelaide.edu.au;dnet;dspace.calstate.edu;dspace.mit.edu;eprints.gla.ac.uk;repositorium.sdum.uminho.pt;repository.ubn.ru.nl;ri.conicet.gov.ar;ruj.uj.edu.pl;sedici.unlp.edu.ar;vinar.vin.bg.ac.rs;wrap.warwick.ac.uk
10.1186/2051-4190-23-2 2013 Erectile function after permanent 125I prostate brachytherapy for localized prostate cancer. 2051-4190 2051-4190 Basic and Clinical Andrology Springer Science and Business Media LLC Springer NA 25780566 Medical research Clinical Sciences health en journal-article 1477.7676 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central
10.3389/fcell.2013.00003 2013 Integrating microRNAs into the complexity of gonadotropin signaling networks. 2296-634X 2296-634X Frontiers in Cell and Developmental Biology Frontiers Media SA Frontiers hal-01136284 25364708 Biology (fond.) Other Biological Sciences;Other Medical and Health Sciences health en journal-article 1815.8692 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by HAL;PubMed Central
10.1007/s13546-012-0566-6 2012 [New therapeutic strategies in ARDS]. 1624-0693,1951-6959 1624-0693 Réanimation Lavoisier Lavoisier NA 32288733 Medical research Clinical Sciences health fr journal-article NA fr NA TRUE FALSE FALSE 2021Q4 repository green NA other PubMed Central
10.1097/qai.0b013e3182821821 2013 Mortality, AIDS-morbidity, and loss to follow-up by current CD4 cell count among HIV-1-infected adults receiving antiretroviral therapy in Africa and Asia: data from the ANRS 12222 collaboration. 1525-4135 1525-4135 JAIDS Journal of Acquired Immune Deficiency Syndromes Ovid Technologies (Wolters Kluwer Health) Wolters Kluwer Health NA 23274931 Medical research Clinical Sciences health en journal-article NA fr NA TRUE FALSE FALSE 2021Q4 repository green NA no license PubMed Central
10.3390/pathogens2020288 2013 From in vitro to in vivo Models of Bacterial Biofilm-Related Infections. 2076-0817 2076-0817 Pathogens MDPI AG MDPI pasteur-01385428 25437038 Medical research Other Medical and Health Sciences health en journal-article 1074.8644 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by CiteSeerX;HAL;PubMed Central;pdfs.semanticscholar.org
10.1186/2194-7511-1-21 2013 Evaluating depressive symptoms in hypomanic and manic episodes using a structured diagnostic tool: validation of a new Mini International Neuropsychiatric Interview (M.I.N.I.) module for the DSM-5 ‘With Mixed Features’ specifier. 2194-7511 2194-7511 International Journal of Bipolar Disorders Springer Science and Business Media LLC Springer NA 25505685 Social sciences Clinical Sciences health en journal-article 1559.8200 dk;fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central
10.3390/plants2040699 2013 The Role of Temperature in the Growth and Flowering of Geophytes. 2223-7747 2223-7747 Plants MDPI AG MDPI NA 27137399 Biology (fond.) Biochemistry and Cell Biology health en journal-article 1111.9713 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central;pdfs.semanticscholar.org
10.1140/epjc/s10052-013-2631-3 2013 Measurement of J/ψ polarization in pp collisions at [Formula: see text]. 1434-6044,1434-6052 1434-6044 The European Physical Journal C Springer Science and Business Media LLC Springer NA 25814848 Physical sciences, Astronomy Physical Sciences health en journal-article 0.0000 es;us;br;de;ie;cn;ch;ua;gb;pl;nl;ro;fr;it NA TRUE FALSE FALSE 2021Q4 publisher;repository green;other cc-by cc-by PubMed Central;US Office of Scientific and Technical Information;arXiv;cds.cern.ch;dspace.mit.edu;eprints.gla.ac.uk;wrap.warwick.ac.uk;www.zora.uzh.ch
10.1186/2193-9616-1-8 2013 Modeling bioavailability to organs protected by biological barriers. 2193-9616 2193-9616 In Silico Pharmacology Springer Science and Business Media LLC Springer NA 25505653 Medical research Pharmacology and Pharmaceutical Sciences health en journal-article NA fr NA TRUE FALSE FALSE 2021Q4 repository green NA cc-by PubMed Central
10.4137/ijtr.s11717 2013 Induction of TDO2 and IDO2 in Liver by High-Fat Feeding in Mice: Discrepancies with Human Obesity. 1178-6469,1178-6469 1178-6469 International Journal of Tryptophan Research SAGE Publications SAGE Publications NA 26882470 Medical research Biochemistry and Cell Biology health en journal-article 566.9791 fr;au NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by-nc cc-by-nc PubMed Central
10.1093/conphys/cot004 2013 Integrating oxidative ecology into conservation physiology. 2051-1434 2051-1434 Conservation Physiology Oxford University Press (OUP) Oxford University Press NA 27293588 Biology (fond.) Other Biological Sciences health en journal-article 1594.0591 de;cl;fr;us NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central;darchive.mblwhoilibrary.org;pdfs.semanticscholar.org
10.5936/csbj.201302013 2013 Automated detection of structural alerts (chemical fragments) in (eco)toxicology. 2001-0370 2001-0370 Computational and Structural Biotechnology Journal Elsevier BV Elsevier hal-01023826 24688706 Medical research Engineering;Other Medical and Health Sciences health en journal-article 1790.1709 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by HAL;PubMed Central
10.1186/2110-5820-2-50 2012 Chronic alcohol exposure, infection, extended circulating white blood cells differentiated by flow cytometry and neutrophil CD64 expression: a prospective, descriptive study of critically ill medical patients. 2110-5820 2110-5820 Annals of Intensive Care Springer Science and Business Media LLC Springer inserm-00771478 23272900 Medical research Clinical Sciences;Public Health and Health Services health en journal-article 1680.2200 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by HAL;PubMed Central
10.1140/epjc/s10052-013-2432-8 2013 Measurement of kT splitting scales in W→ℓν events at [Formula: see text] with the ATLAS detector. 1434-6044,1434-6052 1434-6044 The European Physical Journal C Springer Science and Business Media LLC Springer NA 25814860 Physical sciences, Astronomy Physical Sciences health en journal-article 0.0000 at;us;tr;br;co;nl;ro;gb;se;ca;fr;no;ge;am;pt;ch;za;pl;si;es;de;cn;dk;cl;by;gr;it;au;ar;il;az;jp;cz;ma;sk;tw;rs 775685019 TRUE FALSE FALSE 2021Q4 publisher;repository green;other cc-by cc-by DiVA.org;PubMed Central;US Office of Scientific and Technical Information;arXiv;bib-pubdb1.desy.de;cds.cern.ch;dare.uva.nl;digital.library.adelaide.edu.au;dnet;dspace.calstate.edu;dspace.mit.edu;eprints.gla.ac.uk;openaccess.dogus.edu.tr;repositorium.sdum.uminho.pt;repository.ubn.ru.nl;ri.conicet.gov.ar;ruj.uj.edu.pl;sedici.unlp.edu.ar;vinar.vin.bg.ac.rs;wrap.warwick.ac.uk
10.3389/fbioe.2013.00011 2013 Synergistic Synthetic Biology: Units in Concert. 2296-4185 2296-4185 Frontiers in Bioengineering and Biotechnology Frontiers Media SA Frontiers NA 25022769 Medical research Engineering health en journal-article 1698.6984 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central
10.3389/fchem.2013.00013 2013 Electrochemical promotion of propane oxidation on Pt deposited on a dense β″-Al2O3 ceramic Ag(+) conductor. 2296-2646 2296-2646 Frontiers in Chemistry Frontiers Media SA Frontiers NA 24790942 Chemistry Chemical Sciences health en journal-article 1768.5848 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central
10.3390/pathogens2020264 2013 Henipavirus infections: lessons from animal models. 2076-0817 2076-0817 Pathogens MDPI AG MDPI NA 25437037 Medical research Other Medical and Health Sciences health en journal-article 1074.8644 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by CiteSeerX;PubMed Central;pdfs.semanticscholar.org
10.3390/pathogens3010014 2013 Metabolism of cholesterol and bile acids by the gut microbiota. 2076-0817 2076-0817 Pathogens MDPI AG MDPI hal-01601960 25437605 Biology (fond.) Other Medical and Health Sciences health en journal-article 1074.8644 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by HAL;PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.3390/biology2030894 2013 Structural Sampling of Glycan Interaction Profiles Reveals Mucosal Receptors for Fimbrial Adhesins of Enterotoxigenic Escherichia coli. 2079-7737 2079-7737 Biology MDPI AG MDPI NA 24833052 Biology (fond.) NA health en journal-article 1109.3825 de;ie;be;nl;fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by CiteSeerX;PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.3390/membranes3020044 2013 Experimental Study of Membrane Fouling during Crossflow Microfiltration of Yeast and Bacteria Suspensions: Towards an Analysis at the Microscopic Level. 2077-0375 2077-0375 Membranes MDPI AG MDPI NA 24958619 Biology (fond.) Engineering health en journal-article 737.9951 fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by CiteSeerX;PubMed Central;mdpi.com;pdfs.semanticscholar.org
10.1016/j.bbi.2012.12.013 2013 Lipopolysaccharide-induced anhedonia is abolished in male serotonin transporter knockout rats: an intracranial self-stimulation study. 0889-1591 0889-1591 Brain, Behavior, and Immunity Elsevier BV Elsevier NA 23274951 Medical research Psychology and Cognitive Sciences health en journal-article NA fr;nl NA FALSE FALSE FALSE 2021Q4 closed closed NA NA NA
10.3389/fchem.2013.00015 2013 Self-assembly of a helical zinc-europium complex: speciation in aqueous solution and luminescence. 2296-2646 2296-2646 Frontiers in Chemistry Frontiers Media SA Frontiers NA 24790943 Chemistry Chemical Sciences health en journal-article 1768.5848 ch;fr NA TRUE TRUE TRUE 2021Q4 publisher;repository green;gold cc-by cc-by PubMed Central;infoscience.tind.io


Statistiques générales

# Sous df sans les variables qui prennent trop de valeurs différentes et ralentissent le knit du rapport
sub_df <- bso_data[,c("year","journal_issns","journal_issn_l","journal_name","publisher","publisher_dissemination","hal_id", "bso_classification","bsso_classification","domains","lang","genre","amount_apc_EUR","detected_countries","is_oa","journal_is_in_doaj","journal_is_oa","oa_host_type","oa_colors","licence_publisher","licence_repositories")]

# Summarytools
summarytools::dfSummary(sub_df, style = "grid", graph.magnif = 0.75, valid.col = FALSE, tmp.img.dir = "/tmp", max.tbl.height = 800, headings=FALSE, method = "render")
No Variable Stats / Values Freqs (% of Valid) Graph Missing
1 year
[integer]
Mean (sd) : 2016.9 (2.6)
min < med < max:
1884 < 2017 < 2103
IQR (CV) : 4 (0)
57 distinct values 472
(0.0%)
2 journal_issns
[character]
1. 0302-9743,1611-3349
2. 1932-6203
3. 2045-2322
4. 0004-6361,1432-0746
5. 0151-9638
6. 0732-183X,1527-7755
7. 1556-5068
8. 0006-4971,1528-0020
9. 2041-1723
10. 0031-9007,1079-7114
[ 33716 others ]
14302 ( 1.2%)
10340 ( 0.9%)
8328 ( 0.7%)
5694 ( 0.5%)
5626 ( 0.5%)
5437 ( 0.5%)
4773 ( 0.4%)
4757 ( 0.4%)
4074 ( 0.3%)
3883 ( 0.3%)
1097132 (94.2%)
175851
(13.1%)
3 journal_issn_l
[character]
1. 0302-9743
2. 1932-6203
3. 2045-2322
4. 0004-6361
5. 0151-9638
6. 0732-183X
7. 1556-5068
8. 0006-4971
9. 2041-1723
10. 0031-9007
[ 29782 others ]
14302 ( 1.2%)
10340 ( 0.9%)
8328 ( 0.7%)
5694 ( 0.5%)
5626 ( 0.5%)
5437 ( 0.5%)
4773 ( 0.4%)
4757 ( 0.4%)
4074 ( 0.3%)
3883 ( 0.3%)
1097106 (94.2%)
175877
(13.1%)
4 journal_name
[character]
1. Lecture Notes in Computer
2. Scientific Reports
3. PLOS ONE
4. Astronomy & Astrophysics
5. Annales de Dermatologie e
6. Journal of Clinical Oncol
7. SSRN Electronic Journal
8. Blood
9. Physical Review B
10. Nature Communications
[ 63314 others ]
10051 ( 0.8%)
8328 ( 0.6%)
6610 ( 0.5%)
5694 ( 0.4%)
5626 ( 0.4%)
5437 ( 0.4%)
4773 ( 0.4%)
4757 ( 0.4%)
4530 ( 0.3%)
4074 ( 0.3%)
1260852 (95.5%)
19465
(1.5%)
5 publisher
[character]
1. Elsevier BV
2. Springer Science and Busi
3. Wiley
4. OpenEdition
5. IEEE
6. Elsevier
7. Informa UK Limited
8. Springer International Pu
9. Oxford University Press (
10. CAIRN
[ 6260 others ]
252610 (18.8%)
89344 ( 6.7%)
66604 ( 5.0%)
54751 ( 4.1%)
50670 ( 3.8%)
42339 ( 3.2%)
31552 ( 2.4%)
27033 ( 2.0%)
25512 ( 1.9%)
24550 ( 1.8%)
675216 (50.4%)
16
(0.0%)
6 publisher_dissemination
[character]
1. Elsevier
2. Springer-Nature
3. Wiley
4. OpenEdition
5. IEEE
6. CAIRN
7. Springer
8. Informa
9. Oxford University Press
10. MDPI
[ 5169 others ]
337041 (25.1%)
140750 (10.5%)
92511 ( 6.9%)
85632 ( 6.4%)
66562 ( 5.0%)
62889 ( 4.7%)
37882 ( 2.8%)
33793 ( 2.5%)
31919 ( 2.4%)
22938 ( 1.7%)
428280 (32.0%)
0
(0.0%)
7 hal_id
[character]
1. hal
2. ebg
3. halshs-01523288
4. hal-01483543
5. hal-02431782
6. hal-02559873
7. hal-03321491
8. hal-02972769
9. halshs-02338116
10. hal-01503066
[ 228330 others ]
598 ( 0.3%)
12 ( 0.0%)
8 ( 0.0%)
7 ( 0.0%)
7 ( 0.0%)
7 ( 0.0%)
7 ( 0.0%)
6 ( 0.0%)
6 ( 0.0%)
5 ( 0.0%)
234071 (99.7%)
1105463
(82.5%)
8 bso_classification
[character]
1. Biology (fond.)
2. Chemistry
3. Computer and informatio
4. Earth, Ecology, Energy a
5. Engineering
6. Humanities
7. Mathematics
8. Medical research
9. Physical sciences, Astron
10. Social sciences
11. unknown
199124 (14.9%)
63897 ( 4.8%)
94926 ( 7.1%)
106734 ( 8.0%)
47081 ( 3.5%)
115858 ( 8.6%)
34696 ( 2.6%)
437807 (32.7%)
156411 (11.7%)
83613 ( 6.2%)
50 ( 0.0%)
0
(0.0%)
9 bsso_classification
[character]
1. Clinical Sciences
2. Chemical Sciences
3. Multidisciplinary
4. Oncology and Carcinogenes
5. Psychology and Cognitive
6. Agricultural and Veterina
7. Public Health and Health
8. Other Medical and Health
9. Engineering
10. Cardiorespiratory Medicin
[ 1580 others ]
61504 (17.4%)
29877 ( 8.5%)
25349 ( 7.2%)
17608 ( 5.0%)
17373 ( 4.9%)
14598 ( 4.1%)
13969 ( 4.0%)
13144 ( 3.7%)
12659 ( 3.6%)
12589 ( 3.6%)
134474 (38.1%)
987053
(73.6%)
10 domains
[character]
1. health 356935 (100.0%) 983262
(73.4%)
11 lang
[character]
1. en
2. fr
3. es
4. de
5. it
6. pt
7. ja
8. ru
9. pl
10. nl
[ 74 others ]
1074501 (80.3%)
243119 (18.2%)
6767 ( 0.5%)
4107 ( 0.3%)
2946 ( 0.2%)
2866 ( 0.2%)
1294 ( 0.1%)
499 ( 0.0%)
410 ( 0.0%)
308 ( 0.0%)
1921 ( 0.1%)
1459
(0.1%)
12 genre
[character]
1. book
2. book-chapter
3. journal-article
4. preprint
5. proceedings
8050 ( 0.6%)
108424 ( 8.1%)
1122166 (83.7%)
12320 ( 0.9%)
89235 ( 6.7%)
2
(0.0%)
13 amount_apc_EUR
[numeric]
Mean (sd) : 1791.7 (1053.5)
min < med < max:
0 < 1882.7 < 13975
IQR (CV) : 1218.6 (0.6)
15000 distinct values 974813
(72.7%)
14 detected_countries
[character]
1. fr
2. us;fr
3. fr;us
4. de;fr
5. it;fr
6. fr;it
7. fr;gb
8. fr;cn
9. gb;fr
10. ca;fr
[ 82850 others ]
344964 (50.3%)
14506 ( 2.1%)
8647 ( 1.3%)
6933 ( 1.0%)
6776 ( 1.0%)
6135 ( 0.9%)
6030 ( 0.9%)
5846 ( 0.9%)
5353 ( 0.8%)
5198 ( 0.8%)
275399 (40.2%)
654410
(48.8%)
15 is_oa
[logical]
1. FALSE
2. TRUE
651310 (48.6%)
688887 (51.4%)
0
(0.0%)
16 journal_is_in_doaj
[logical]
1. FALSE
2. TRUE
1160712 (86.6%)
179485 (13.4%)
0
(0.0%)
17 journal_is_oa
[logical]
1. FALSE
2. TRUE
1128442 (84.2%)
211755 (15.8%)
0
(0.0%)
18 oa_host_type
[character]
1. closed
2. publisher
3. publisher;repository
4. repository
651310 (48.6%)
183863 (13.7%)
278419 (20.8%)
226605 (16.9%)
0
(0.0%)
19 oa_colors
[character]
1. closed
2. diamond
3. gold
4. green
5. green;diamond
6. green;gold
7. green;hybrid
8. green;other
9. hybrid
10. other
651310 (48.6%)
23406 ( 1.7%)
16540 ( 1.2%)
226605 (16.9%)
25139 ( 1.9%)
127884 ( 9.5%)
81543 ( 6.1%)
43853 ( 3.3%)
72090 ( 5.4%)
71827 ( 5.4%)
0
(0.0%)
20 licence_publisher
[character]
1. cc-by
2. cc-by-nc
3. cc-by-nc-nd
4. cc-by-nc-nd;cc-by-nc-sa
5. cc-by-nc-sa
6. cc-by-nc;cc-by-nd
7. cc-by-nc;cc-by-sa
8. cc-by-nd
9. cc-by-sa
10. no license
11. other
171869 (37.2%)
23948 ( 5.2%)
59720 (12.9%)
4 ( 0.0%)
5423 ( 1.2%)
2 ( 0.0%)
1 ( 0.0%)
689 ( 0.1%)
1921 ( 0.4%)
188833 (40.8%)
9872 ( 2.1%)
877915
(65.5%)
21 licence_repositories
[character]
1. no license
2. cc-by
3. cc-by-nc-nd
4. cc-by-nc
5. cc-by-nc-sa
6. other
7. cc-by-sa
8. cc-by-nd
9. cc-by-nc-nd;cc-by-nc-sa
10. cc-by-nc;cc-by-nd
[ 2 others ]
299033 (59.2%)
142911 (28.3%)
30556 ( 6.1%)
19088 ( 3.8%)
4935 ( 1.0%)
4551 ( 0.9%)
2131 ( 0.4%)
1416 ( 0.3%)
306 ( 0.1%)
49 ( 0.0%)
48 ( 0.0%)
835173
(62.3%)

Attention : les montants des APC ont 4 décimales après la virgule.


  • Cas particulier des APC à 0 euro
# Sous-base avec uniquement les APC de 0 euro
apc_0 <- bso_data %>% filter(amount_apc_EUR == 0)

52050 articles ont des APC à 0 euro, ce qui représente 3.88% de la base totale. Voici les statuts associés à ces articles avec leur fréquence (résultats obtenus sur une sous-base qui filtre les montants des APC à 0 : filter(amount_apc_EUR == 0)). Les principales “couleurs” sont donc green;diamond et diamond.

# On affiche les occurrences des couleurs OA dans la sous-base des APC==0
apc_0_colors <- apc_0 %>% group_by(oa_colors) %>% summarise(frequence = n()) %>% mutate(pourcentage = round(frequence/sum(frequence)*100, 2)) %>% arrange(desc(frequence))
kable(apc_0_colors, format = "html") %>% 
  kable_styling(bootstrap_options = c("striped", "hover"), 
                full_width = F, 
                html_font = "sans-serif")
oa_colors frequence pourcentage
green;diamond 25139 48.30
diamond 23406 44.97
other 1880 3.61
green;other 1625 3.12


  • Cas particulier des APC manquants
# Sous-base avec uniquement les APC de 0 euro
apc_NA <- bso_data %>% filter(is.na(amount_apc_EUR))

974813 articles ont des APC non renseignés, ce qui représente 72.74% de la base totale. Voici les statuts associés à ces articles avec leur fréquence (résultats obtenus sur une sous-base qui filtre les montants des APC manquants : filter(is.na(amount_apc_EUR))). Les principales “couleurs” sont donc closed et green.

# On affiche les occurrences des couleurs OA dans la sous-base des APC==0
apc_NA_colors <- apc_NA %>% group_by(oa_colors) %>% summarise(frequence = n()) %>% mutate(pourcentage = round(frequence/sum(frequence)*100, 2)) %>% arrange(desc(frequence))
kable(apc_NA_colors, format = "html") %>% 
  kable_styling(bootstrap_options = c("striped", "hover"), 
                full_width = F, 
                html_font = "sans-serif")
oa_colors frequence pourcentage
closed 651310 66.81
green 226605 23.25
other 61763 6.34
green;other 34720 3.56
green;gold 253 0.03
gold 135 0.01
green;hybrid 14 0.00
hybrid 13 0.00


Résumé du nombre de valeurs manquantes

# On compte le nombre de valeurs manquantes
nb_NA <- as.data.frame(apply(is.na(bso_data), 2, sum)) %>% 
                       rename(`nombre de NA` = `apply(is.na(bso_data), 2, sum)`) %>%
                       mutate(pourcentage = `nombre de NA`/nrow(bso_data)*100) %>% 
                       mutate(pourcentage = round(pourcentage, 2))
nb_NA %>% datatable(options=list(pageLength=ncol(bso_data), searching=F), width = '60%')


Nombre de publications par année

Échantillon complet

# Histogramme du nombre de publication
histogram <- ggplot(bso_data) +
  geom_histogram(aes(x = year, text = paste("\n bso_data :", as.character(year))), bins = 84L, fill = "#0C4C8A") +
  labs(
    x = "Date",
    y = "Publications",
    title = "Évolution du nombre de publications"
  ) +
  theme_minimal()
ggplotly(histogram)


2013-2020

# Histogramme du nombre de publication
histogram <- bso_data %>% filter(year > 2012 & year < 2021) %>% 
    ggplot() +
  geom_histogram(aes(x = year, text = paste("\n bso_data :", as.character(year))), bins = 84L, fill = "#0C4C8A") +
  labs(
    x = "Date",
    y = "Publications",
    title = "Évolution du nombre de publications"
  ) +
  theme_minimal()
ggplotly(histogram)


Nombre d’articles publiés par les 20 plus gros éditeurs

# Table du nombre d'articles par éditeur
t0 <- as.data.frame(table(bso_data$publisher_dissemination)) %>% mutate(pourcentage = round(Freq/sum(Freq)*100, 2)) %>% arrange(desc(Freq))

# Graphique
barplot <- t0[c(1:20),] %>% 
    mutate(Var1 = fct_reorder(Var1, Freq)) %>%
    ggplot(aes(x = Var1, y = Freq)) +
  geom_bar(stat="identity", fill = "#0C4C8A") +
  geom_text(aes(x = Var1, y = Freq+0.07*max(Freq)), label = paste(t0[c(1:20),]$pourcentage, "%", sep = ""),
            colour = "black", fontface = "bold") +
  labs(x = "Éditeur", y = "Nombre d'articles",
       title = "Les 20 éditeurs ayant publié le plus d'articles") +
  coord_flip() +
  theme_minimal()
ggplotly(barplot) 



II - Sous-base filtrée

# Sous-base filtrée sur les publications gold et les années de 2013 à 2020
bso_filtre <- bso_data %>% select(doi, title, journal_issns, journal_issn_l, publisher, publisher_dissemination, oa_colors, year, lang, amount_apc_EUR, detected_countries) %>% 
    filter(oa_colors == "gold" | oa_colors == "green;gold",
           year > 2012 & year < 2021)

# On exporte la sous-base créée
rio::export(bso_filtre, "../data/interim/bso_filtre.csv")

La sous-base ‘bso_filtre’ correspond à une extraction du jeu entier du BSO avec les critères suivants :

  • le statut OA est “gold” ou “green;gold” ;
  • l’année de publication va de 2013 à 2020 inclus ;
  • nous ne retenons que les variables qui nous intéressent.

La sous-base ainsi obtenue contient 124805 observations, ce qui correspond à 9.31% de la base initiale. Les 10 variables retenues dans cette extraction sont les suivantes : doi, title, journal_issns, journal_issn_l, publisher, publisher_dissemination, oa_colors, year, lang, amount_apc_EUR, detected_countries.


Statistiques de la sous-base

# Summarytools
summarytools::dfSummary(bso_filtre, style = "grid", graph.magnif = 0.75, valid.col = FALSE, tmp.img.dir = "/tmp", max.tbl.height = 800, headings=FALSE, method = "render")
No Variable Stats / Values Freqs (% of Valid) Graph Missing
1 doi
[character]
1. 10.1001/jamanetworkopen.2
2. 10.1001/jamanetworkopen.2
3. 10.1001/jamanetworkopen.2
4. 10.1001/jamanetworkopen.2
5. 10.1001/jamanetworkopen.2
6. 10.1001/jamanetworkopen.2
7. 10.1001/jamanetworkopen.2
8. 10.1001/jamanetworkopen.2
9. 10.1001/jamanetworkopen.2
10. 10.1001/jamanetworkopen.2
[ 124795 others ]
1 ( 0.0%)
1 ( 0.0%)
1 ( 0.0%)
1 ( 0.0%)
1 ( 0.0%)
1 ( 0.0%)
1 ( 0.0%)
1 ( 0.0%)
1 ( 0.0%)
1 ( 0.0%)
124795 (100.0%)
0
(0.0%)
2 title
[character]
1. Preface
2. Editorial
3. (Empty string)
4. Blockchain protocols in c
5. Book Reviews
6. Endorsement of Internatio
7. The Authors Reply.
8. Computational science: sh
9. Entomological determinant
10. Introducing high school s
[ 124609 others ]
18 ( 0.0%)
15 ( 0.0%)
5 ( 0.0%)
4 ( 0.0%)
4 ( 0.0%)
4 ( 0.0%)
4 ( 0.0%)
3 ( 0.0%)
3 ( 0.0%)
3 ( 0.0%)
124742 (99.9%)
0
(0.0%)
3 journal_issns
[character]
1. 1932-6203
2. 2045-2322
3. 2041-1723
4. 1742-6588,1742-6596
5. 2405-8963
6. 1664-302X
7. 1094-4087
8. 1422-0067
9. 1664-3224
10. 1949-2553
[ 3311 others ]
9830 ( 7.9%)
7335 ( 5.9%)
3077 ( 2.5%)
2377 ( 1.9%)
1959 ( 1.6%)
1420 ( 1.1%)
1370 ( 1.1%)
1297 ( 1.0%)
1244 ( 1.0%)
1057 ( 0.8%)
93807 (75.2%)
32
(0.0%)
4 journal_issn_l
[character]
1. 1932-6203
2. 2045-2322
3. 2041-1723
4. 1742-6588
5. 2405-8963
6. 1664-302X
7. 1094-4087
8. 1422-0067
9. 1664-3224
10. 1949-2553
[ 3031 others ]
9830 ( 7.9%)
7335 ( 5.9%)
3077 ( 2.5%)
2696 ( 2.2%)
1959 ( 1.6%)
1420 ( 1.1%)
1370 ( 1.1%)
1297 ( 1.0%)
1244 ( 1.0%)
1057 ( 0.8%)
93488 (74.9%)
32
(0.0%)
5 publisher
[character]
1. Springer Science and Busi
2. Public Library of Science
3. MDPI AG
4. Frontiers Media SA
5. Elsevier BV
6. Multidisciplinary Digital
7. IOP Publishing
8. Copernicus GmbH
9. Elsevier
10. Wiley
[ 538 others ]
26038 (20.9%)
12308 ( 9.9%)
12107 ( 9.7%)
11088 ( 8.9%)
8224 ( 6.6%)
4999 ( 4.0%)
4300 ( 3.4%)
4034 ( 3.2%)
3248 ( 2.6%)
3036 ( 2.4%)
35420 (28.4%)
3
(0.0%)
6 publisher_dissemination
[character]
1. Springer-Nature
2. MDPI
3. Public Library of Science
4. Frontiers
5. Elsevier
6. IOP Publishing
7. Copernicus
8. Springer
9. Wiley
10. Informa
[ 476 others ]
23362 (18.7%)
17106 (13.7%)
12519 (10.0%)
12184 ( 9.8%)
11480 ( 9.2%)
4300 ( 3.4%)
4034 ( 3.2%)
4002 ( 3.2%)
3760 ( 3.0%)
2941 ( 2.4%)
29117 (23.3%)
0
(0.0%)
7 oa_colors
[character]
1. gold
2. green;gold
13866 (11.1%)
110939 (88.9%)
0
(0.0%)
8 year
[integer]
Mean (sd) : 2017.3 (2.2)
min < med < max:
2013 < 2018 < 2020
IQR (CV) : 4 (0)
2013 : 8918 ( 7.1%)
2014 : 10289 ( 8.2%)
2015 : 12266 ( 9.8%)
2016 : 13667 (11.0%)
2017 : 15772 (12.6%)
2018 : 17212 (13.8%)
2019 : 20403 (16.3%)
2020 : 26278 (21.1%)
0
(0.0%)
9 lang
[character]
1. en
2. fr
3. pt
4. ja
5. es
6. de
7. id
8. it
9. uk
10. ar
[ 10 others ]
124375 (99.7%)
171 ( 0.1%)
54 ( 0.0%)
50 ( 0.0%)
45 ( 0.0%)
39 ( 0.0%)
26 ( 0.0%)
9 ( 0.0%)
7 ( 0.0%)
6 ( 0.0%)
19 ( 0.0%)
4
(0.0%)
10 amount_apc_EUR
[numeric]
Mean (sd) : 1700 (731.6)
min < med < max:
4.4 < 1605.2 < 7140
IQR (CV) : 699.1 (0.4)
10171 distinct values 68
(0.1%)
11 detected_countries
[character]
1. fr
2. us;fr
3. fr;us
4. de;fr
5. it;fr
6. fr;gb
7. fr;it
8. ca;fr
9. gb;fr
10. fr;cn
[ 18642 others ]
36585 (38.3%)
2413 ( 2.5%)
1590 ( 1.7%)
1278 ( 1.3%)
1106 ( 1.2%)
1079 ( 1.1%)
1008 ( 1.1%)
895 ( 0.9%)
882 ( 0.9%)
828 ( 0.9%)
47865 (50.1%)
29276
(23.5%)


Résumé du nombre de valeurs manquantes

# On compte le nombre de valeurs manquantes
nb_NA <- as.data.frame(apply(is.na(bso_filtre), 2, sum)) %>% 
                       rename(`nombre de NA` = `apply(is.na(bso_filtre), 2, sum)`) %>%
                       mutate(pourcentage = `nombre de NA`/nrow(bso_filtre)*100) %>% 
                       mutate(pourcentage = round(pourcentage, 2))
nb_NA %>% datatable(options=list(pageLength=ncol(bso_filtre), searching=F), width = '60%')


Les 20 plus gros éditeurs sur toute la période 2013-2020

En nombre d’articles

# Table du nombre d'articles par éditeur
t1 <- as.data.frame(table(bso_filtre$publisher_dissemination)) %>% mutate(pourcentage = round(Freq/sum(Freq)*100, 2)) %>% arrange(desc(Freq))

# Graphique
barplot <- t1[c(1:20),] %>% 
    mutate(Var1 = fct_reorder(Var1, Freq)) %>%
    ggplot(aes(x = Var1, y = Freq)) +
  geom_bar(stat="identity", fill = "#112446") +
  geom_text(aes(x = Var1, y = Freq+0.07*max(Freq)), label = paste(t1[c(1:20),]$pourcentage, "%", sep = ""),
            colour = "black", fontface = "bold") +
  labs(
    x = "Éditeur",
    y = "Nombre d'articles",
    title = "Les 20 éditeurs ayant publié le plus d'articles"
  ) +
  coord_flip() +
  theme_minimal()
ggplotly(barplot)

Le graphique ci-dessus montre que l’éditeur Springer a publié le plus d’articles entre 2013 et 2020, un total de 23 362 articles soit 18.72% des publications.


En somme des APC

# Table du nombre d'articles par éditeur
t2 <- bso_filtre %>% group_by(publisher_dissemination) %>% summarise(sum_APC = sum(amount_apc_EUR)) %>% 
    mutate(pourcentage = round(sum_APC/sum(bso_filtre$amount_apc_EUR, na.rm = TRUE)*100, 2)) %>% arrange(desc(sum_APC))

# Nombre de NA pour la variable du montant des APC
n <- bso_filtre %>% count(is.na(amount_apc_EUR))

# 20 plus gros éditeurs en somme des APC de 2013 à 2020
top20_publish <- t2[c(1:20),1]
#test <- as.vector(t(top20_publish))

# Graphique
barplot <- t2[c(1:20),] %>% 
    mutate(publisher_dissemination = fct_reorder(publisher_dissemination, sum_APC)) %>%
    ggplot(aes(x = publisher_dissemination, y = sum_APC)) +
  geom_bar(stat="identity", fill = "#990000") +
  geom_text(aes(x = publisher_dissemination, y = sum_APC+0.09*max(sum_APC)), label = paste(t2[c(1:20),]$pourcentage, "%", sep = ""),
            colour = "black", fontface = "bold") +
  labs(
    x = "Éditeur",
    y = "Somme des APC",
    title = "Les 20 éditeurs ayant cumulé le plus d'APC"
  ) +
  coord_flip() +
  theme_minimal()
ggplotly(barplot) %>% 
    layout(title = list(text = paste0("Les 20 éditeurs ayant cumulé le plus d'APC",
                                    '<br>',
                                    '<sup>',
                                    paste("Vigilance ;", n[2,2], "montants des APC manquants dans la sous-base"),'</sup>')))

Le graphique ci-dessus montre que c’est l’éditeur “Springer” qui cumule le plus d’APC sur la période 2013-2020 : ils représentent 21.99% de la somme des APC de tous les éditeurs sur cette même période.


En moyenne des APC

# Table du nombre d'articles par éditeur
t3 <- bso_filtre %>% group_by(publisher_dissemination) %>% summarise(mean_APC = mean(amount_apc_EUR)) %>% 
    mutate(pourcentage = round(mean_APC/sum(mean_APC, na.rm = TRUE)*100, 2)) %>% arrange(desc(mean_APC))

# Graphique
barplot <- t3[c(1:20),] %>% 
    mutate(publisher_dissemination = fct_reorder(publisher_dissemination, mean_APC)) %>%
    ggplot(aes(x = publisher_dissemination, y = mean_APC)) +
  geom_bar(stat="identity", fill = "#666666") +
  geom_text(aes(x = publisher_dissemination, y = mean_APC+0.09*max(mean_APC)), label = paste(t3[c(1:20),]$pourcentage, "%", sep = ""),
            colour = "black", fontface = "bold") +
  labs(
    x = "Éditeur",
    y = "APC moyen",
    title = "Les 20 éditeurs ayant en moyenne les APC les plus élevés"
  ) +
  coord_flip() +
  theme_minimal() +
  theme(plot.title = element_text(hjust=1))
ggplotly(barplot) %>% 
    layout(title = list(text = paste0('Les 20 éditeurs ayant en moyenne les APC les plus élevés',
                                    '<br>',
                                    '<sup>',
                                    paste("Vigilance ; ", n[2,2], "montants des APC manquants dans la sous-base"),'</sup>')))

Ce graphique montre que les écarts entre les montants moyens des APC pour chaque éditeur sont faibles. C’est l’éditeur “Department of Food Science, Bogor Agricultural Food Science” qui a les APC les plus élevés en moyenne (6318 euros), ils représentent 1.91% de la somme des moyennes des APC.


Les 20 plus gros éditeurs par année

En nombre d’articles

# Table du nombre d'articles par éditeur
t1_annee <- bso_filtre %>% group_by(publisher_dissemination, year) %>% summarise(Freq = n())
t1_annee <- t1_annee %>% group_by(year) %>% top_n(20, Freq)

# On remplace certains noms par des acronymes 
t1_annee$publisher_dissemination <- str_replace_all(t1_annee$publisher_dissemination, c("Ferrata Storti Foundation \\(Haematologica\\)" = "FSF",
                                                                                        "American Association for the Advancement of Science" = "AAAS",
                                                                                        "Association for Research in Vision and Ophthalmology \\(ARVO\\)" = "ARVO",
                                                                                        "International Union of Crystallograph" = "IUC"))

# Graphique
barplot1 <- t1_annee %>% 
    mutate(publisher_dissemination = fct_reorder(publisher_dissemination, Freq)) %>%
    ggplot(aes(x = publisher_dissemination, y = Freq)) +
  geom_bar(stat="identity", fill = "#112446") +
  coord_flip() + transition_time(year) +
  labs(
    x = "Éditeur",
    y = "Nombre d'articles",
    title = "Les 20 éditeurs ayant publié le plus d'articles",
    subtitle = "Année: {round(frame_time, 0)}"
  ) +
  theme_minimal()
barplot1 <- animate(barplot1)

# On sauvegarde et on affiche
anim_save("../figures/barplot1.gif", barplot1)
knitr::include_graphics("../figures/barplot1.gif")

Certains éditeurs ont été remplacés par des acronymes sur le graphique, par souci de lisibilité. Les correspondances sont les suivantes :

  • AAAS : American Association for the Advancement of Science
  • FSF : Ferrata Storti Foundation (Haematologica)
  • ARVO : Association for Research in Vision and Ophthalmology (ARVO)
  • IUC : International Union of Crystallograph

En somme des APC

# Table du nombre d'articles par éditeur
t2_annee <- bso_filtre %>% group_by(publisher_dissemination, year) %>% summarise(sum_APC = sum(amount_apc_EUR)) 
t2_annee <- t2_annee %>% group_by(year) %>% top_n(20, sum_APC)

# On remplace certains noms par des acronymes 
t2_annee$publisher_dissemination <- str_replace_all(t2_annee$publisher_dissemination, c("Ferrata Storti Foundation \\(Haematologica\\)" = "FSF",
                                                                                        "American Association for the Advancement of Science" = "AAAS",
                                                                                        "Association for Research in Vision and Ophthalmology \\(ARVO\\)" = "ARVO"))
# Graphique
barplot2 <- t2_annee %>% 
    mutate(publisher_dissemination = fct_reorder(publisher_dissemination, sum_APC)) %>%
    ggplot(aes(x = publisher_dissemination, y = sum_APC)) +
  geom_bar(stat="identity", fill = "#990000") +
  labs(
    x = "Éditeur",
    y = "Somme des APC",
    title = "Les 20 éditeurs ayant cumulé le plus d'APC",
    subtitle = "Année: {round(frame_time, 0)}"
  ) +
  coord_flip() + transition_time(year) +
  theme_minimal()
barplot2 <- animate(barplot2)

# On sauvegarde puis on affiche
anim_save("../figures/barplot2.gif", barplot2)
knitr::include_graphics("../figures/barplot2.gif")

Certains éditeurs ont été remplacés par des acronymes sur le graphique, par souci de lisibilité. Les correspondances sont les suivantes :

  • AAAS : American Association for the Advancement of Science
  • FSF : Ferrata Storti Foundation (Haematologica)
  • ARVO : Association for Research in Vision and Ophthalmology (ARVO)

En moyenne des APC

knitr::include_graphics("../figures/barplot3.gif")

Certains éditeurs ont été remplacés par des acronymes sur le graphique, par souci de lisibilité. Les correspondances sont les suivantes :

  • AAAS : American Association for the Advancement of Science
  • FSF : Ferrata Storti Foundation (Haematologica)
  • ARVO : Association for Research in Vision and Ophthalmology (ARVO)
  • DFS - BAFS : Department of Food Science, Bogor Agricultural Food Science
  • ASCO : American Society of Clinical Oncology (ASCO)
  • EOCJC : Editorial Office of Chinese Journal of Cancer
  • AMS : American Mathematical Society (AMS)
  • ICFJ : International Cardiovascular Forum Journal
  • ACA : American Crystallographic Association ACA
 

Document sous licence ouverte